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Characterization of the genome of the mealybug Planococcus lilacinus, a model organism for studying whole-chromosome imprinting and inactivation

Published online by Cambridge University Press:  23 May 2002

K. NAGA MOHAN
Affiliation:
Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560 012, India Centre for Human Genetics, G-5, International Technology Park, Whitefield Road, Bangalore 560 066, India
PARAMITA RAY
Affiliation:
Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560 012, India
H. SHARAT CHANDRA
Affiliation:
Department of Microbiology and Cell Biology, Indian Institute of Science, Bangalore 560 012, India Centre for Human Genetics, G-5, International Technology Park, Whitefield Road, Bangalore 560 066, India

Abstract

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The co-occurrence of three chromosome-wide phenomena – imprinting, facultative heterochromatization and diffuse centromere – in the mealybug Planococcus lilacinus makes investigation of the genomics of this species an attractive prospect. In order to estimate the complexity of the genome of this species, 300 random stretches of its DNA, constituting ∼0·1% of the genome, were sequenced. Coding sequences appear to constitute ∼53·5%, repeat sequences ∼44·5% and non-coding single-copy sequences ∼2% of the genome. The proportion of repetitive sequences in the mealybug is higher than that in the fruit fly Drosophila melanogaster (∼30%). The mealybug genome (∼220 Mb) is about 1·3 times the size of the fly genome (∼165 Mb) and its GC content (∼35%) less than that of the fly genome (∼40%). The relative abundance of various dinucleotides, as analysed by the method of Gentles and Karlin, shows that the dinucleotide signatures of the two species are moderately similar and that in the mealybug there is neither over-representation nor under-representation of any dinucleotide.

Type
Research Article
Copyright
© 2002 Cambridge University Press