Skip to main content
×
×
Home
  • Get access
    Check if you have access via personal or institutional login
  • Cited by 4
  • Cited by
    This (lowercase (translateProductType product.productType)) has been cited by the following publications. This list is generated based on data provided by CrossRef.

    Shapcott, Alison Lamont, Robert O'Connor, Katie James, Heather and Benwell, Andrew 2016. How is genetic variability in the threatened rainforest vineMarsdenia longilobadistributed at different geographical scales?. Botanical Journal of the Linnean Society,

    Barr, Kelly R. Kus, Barbara E. Preston, Kristine L. Howell, Scarlett Perkins, Emily and Vandergast, Amy G. 2015. Habitat fragmentation in coastal southern California disrupts genetic connectivity in the cactus wren (Campylorhynchus brunneicapillus). Molecular Ecology, Vol. 24, Issue. 10, p. 2349.

    Geiger, John H. Meerow, Alan W. Lewis, Carl Oviedo, Ramona and Francisco-Ortega, Javier 2014. Genetic diversity and conservation ofIpomoea microdactyla(Convolvulaceae): an endemic vine from the Bahamas, Cuba, and southeastern Florida. Plant Species Biology, Vol. 29, Issue. 1, p. 2.

    Unger, Shem D. Rhodes, Olin E. Sutton, Trent M. Williams, Rod N. and Crandall, Keith A. 2013. Population Genetics of the Eastern Hellbender (Cryptobranchus alleganiensis alleganiensis) across Multiple Spatial Scales. PLoS ONE, Vol. 8, Issue. 10, p. e74180.

    ×
  • Print publication year: 2010
  • Online publication date: July 2014

9 - Implications of landscape alteration for the conservation of genetic diversity of endangered species

Summary

Humans have dramatically altered biotic communities around the world. During the process of converting forests, grasslands, and wetlands for agriculture, urban development, and transportation, the remnants of natural habitat have become increasingly fragmented. This fragmentation of habitat has many biological consequences. Foremost is the reduction of available habitat resulting in a reduced size of populations of species dependent on natural land covers (Andren 1994; Fahrig 1997, 2003). Fragmentation, though, is more than just habitat loss; it is also the division of remaining habitat into patches that experience at least partial isolation from other such fragments (Fahrig 2003). Fragmentation increases habitat edges and, consequently, the exposure of populations to the resulting alterations in microclimate and biota associated with edge environments (Suarez et al. 1998; Fagan et al. 1999). As fragments become more isolated, the frequency of movements between fragments is reduced. Furthermore, when localized extinctions in isolated fragments occur, immigration from neighboring fragments can be insufficient to allow recolonization (Tilman et al. 1994; Fahrig 2003). Extinctions associated with demographic stochasticity are expected to be more common in small fragments than in more continuous habitat tracts (Griffen & Drake 2008).

The consequences of fragmentation have the potential to influence genetic diversity in species requiring continuous tracts of habitat (see Chapter 8 by J. Hamrick). Localized population declines cause allele frequencies to drift; moreover, widespread population declines due to fragmentation across the range of a species may reduce its effective population size (Pannell & Charlesworth 2000; Alo & Turner 2005). With declines of census and effective population size, inhabitants of isolated fragments begin to resemble independent populations, become more vulnerable to stochastic processes, lose genetic diversity, and increase in relatedness (Barrowclough 1980; Leberg 2005).

Recommend this book

Email your librarian or administrator to recommend adding this book to your organisation's collection.

Molecular Approaches in Natural Resource Conservation and Management
  • Online ISBN: 9780511777592
  • Book DOI: https://doi.org/10.1017/CBO9780511777592
Please enter your name
Please enter a valid email address
Who would you like to send this to *
×
References
Alo, D, Turner, TF (2005) Effects of habitat fragmentation on effective population size in the endangered Rio Grande silvery minnow. Conservation Biology, 19, 1138–1148.
Amos, W, Balmford, A (2001) When does conservation genetics matter?Heredity, 87, 257–265.
Andren, H (1994) Effects of habitat fragmentation on birds and mammals in landscapes with different proportions of suitable habitat – a review. Oikos, 71, 355–366.
Arguedas, N, Parker, PG (2000) Seasonal migration and genetic population structure in house wrens. The Condor, 102, 517–528.
Avise, JC (1992) Molecular population-structure and the biogeographic history of a regional fauna – A case-history with lessons for conservation biology. Oikos, 63, 62–76.
Balloux, F, Lugon-Moulin, N (2002) The estimation of population differentiation with microsatellite markers. Molecular Ecology, 11, 155–165.
Barr, KR, Dharmarajan, G, Rhodes, OE Jr, Lance, R, Leberg, PL (2007) Novel microsatellite loci for the study of the black-capped vireo (Vireo atricapilla). Molecular Ecology Notes, 7, 1067–1069.
Barr, KR, Lindsay, DL, Athrey, G et al. (2008) Population structure in an endangered songbird: maintenance of genetic differentiation despite high vagility and significant population recovery. Molecular Ecology, 17, 3628–3639.
Barrowclough, GF (1980) Gene flow, effective population sizes, and genetic variance-components in birds. Evolution, 34, 789–798.
Berry, O, Tocher, MD, Sarre, SD (2004) Can assignment tests measure dispersal?Molecular Ecology, 13, 551–561.
Bohonak, AJ (1999) Dispersal, gene flow, and population structure. Quarterly Review of Biology, 74, 21–45.
Burnham, KP, Anderson, DR (2002) Model selection and multimodel inference: a practical information theoretic approach, 2nd ed. Springer-Verlag, New York, NY.
Cale, PG (2003) The influence of social behaviour, dispersal and landscape fragmentation on population structure in a sedentary bird. Biological Conservation, 109, 237–248.
Clegg, SM, Kelly, JF, Kimura, M, Smith, TB (2003) Combining genetic markers and stable isotopes to reveal population connectivity and migration patterns in a neotropical migrant, Wilson's warbler (Wilsonia pusilla). Molecular Ecology, 12, 819–830.
Cornuet, JM, Luikart, G (1996) Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144, 2001–2014.
Crochet, PA (2000) Genetic structure of avian populations – allozymes revisited. Molecular Ecology, 9, 1463–1469.
Crow, JF, Denniston, C (1988) Inbreeding and variance effective population numbers. Evolution, 42, 482–495.
Crow, JF, Kimura, M (1970) An Introduction to Population Genetics Theory. Harper & Row, New York.
Eon, R, Glenn, SM, Parfitt, I, Fortin, MJ (2002) Landscape connectivity as a function of scale and organism vagility in a real forested landscape. Conservation Ecology, 6. [online] URL:
Dallas, JF, Marshall, F, Piertney, SB, Bacon, PJ, Racey, PA (2002) Spatially restricted gene flow and reduced microsatellite polymorphism in the Eurasian otter Lutra lutra in Britain. Conservation Genetics, 3, 15–29.
DeAngelis, DL, Waterhouse, JC (1987) Equilibrium and nonequilibrium concepts in ecological models. Ecological Monographs, 57, 1–21.
Desrochers, A, Hannon, SJ (1997) Gap crossing decisions by forest songbirds during the post-fledging period. Conservation Biology, 11, 1204–1210.
DiBattista, JD (2008) Patterns of genetic variation in anthropogenically impacted populations. Conservation Genetics, 9, 141–156.
Doak, P (2000) Population consequences of restricted dispersal for an insect herbivore in a subdivided habitat. Ecology, 81, 1828–1841.
Fagan, WF, Cantrell, RS, Cosner, C (1999) How habitat edges change species interactions. The American Naturalist, 153, 165–182.
Fahrig, L (1997) Relative effects of habitat loss and fragmentation on population extinction. Journal of Wildlife Management, 61, 603–610.
Fahrig, L (2003) Effects of habitat fragmentation on biodiversity. Annual Review of Ecology Evolution and Systematics, 34, 487–515.
Fazio, VW, Miles, DB, White, MM (2004) Genetic differentiation in the endangered black-capped vireo. Condor, 106, 377–385.
Frankham, R (1996) Relationship of genetic variation to population size in wildlife. Conservation Biology, 10, 1500–1508.
Frankham, R (1997) Do island populations have less genetic variation than mainland populations?Heredity, 78, 311–327.
Frankham, R (2005) Genetics and extinction. Biological Conservation, 126, 131–140.
Fraser, DJ, Lippe, C, Bernatchez, L (2004) Consequences of unequal population size, asymmetric gene flow and sex-biased dispersal on population structure in brook charr (Salvelinus fontinalis). Molecular Ecology, 13, 67–80.
Fuhlendorf, SD, Engle, DM (2001) Restoring heterogeneity on rangelands: ecosystem management based on evolutionary grazing patterns. Bioscience, 51, 625–632.
Fuhlendorf, SD, Engle, DM (2004) Application of the fire-grazing interaction to restore a shifting mosaic on tallgrass prairie. Journal of Applied Ecology, 41, 604–614.
Fuhlendorf, SD, Smeins, FE (1997) Long-term vegetation dynamics mediated by herbivores, weather and fire in a Juniperus-Quercus savanna. Journal of Vegetation Science, 8, 819–828.
Gibbs, HL, Dawson, RJG, Hobson, KA (2000) Limited differentiation in microsatellite DNA variation among northern populations of the yellow warbler: evidence for male-biased gene flow?Molecular Ecology, 9, 2137–2147.
Graber, JW (1961) Distribution, habitat requirements and life history of the black-capped vireo (Vireo atricapilla). Ecological Monographs, 31, 25.
Grapputo, A, Boman, S, Lindstrom, L, Lyytinen, A, Mappes, J (2005) The voyage of an invasive species across continents: genetic diversity of North American and European Colorado potato beetle populations. Molecular Ecology, 14, 4207–4219.
Griffen, BD, Drake, JM (2008) Effects of habitat quality and size on extinction in experimental populations. Proceedings of the Royal Society of London-Series B: Biological Sciences, 275, 2251–2256.
Grzybowski, J (1991) Black-capped Vireo (Vireo atricapillus) Recovery Plan. U.S. Fish and Wildlife Service, Albuquerque, NM.
Grzybowski, J (1995) Black-capped vireo (Vireo atricapillus). In: Birds of North America (eds. Poole, A, Gill, F). The American Ornithologist's Union, Washington, DC.
Gu, WD, Heikkila, R, Hanski, I (2002) Estimating the consequences of habitat fragmentation on extinction risk in dynamic landscapes. Landscape Ecology, 17, 699–710.
Hansson, B, Bensch, S, Hasselquist, D, Nielsen, B (2002) Restricted dispersal in a long-distance migrant bird with patchy distribution, the great reed warbler. Oecologia, 130, 536–542.
Harris, RJ, Reid, JM (2002) Behavioral barriers to non-migratory movements of birds. Annales Zoologici Fennici, 39, 275–290.
Hunter, WC, Buehler, DA, Canterbury, RA, Confer, JL, Hamel, PB (2002) Conservation of disturbance-dependent birds in eastern North America. Wildlife Society Bulletin, 29, 440–455.
Hutchison, DW, Templeton, AR (1999) Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53, 1898–1914.
Johansson, M, Primmer, CR, Merila, J (2007) Does habitat fragmentation reduce fitness and adaptability? A case study of the common frog (Rana temporaria). Molecular Ecology, 16, 2693–2700.
Joshi, J, Stoll, P, Rusterholz, HP et al. (2006) Small-scale experimental habitat fragmentation reduces colonization rates in species-rich grasslands. Oecologia, 148, 144–152.
Kawamura, K, Kubota, M, Furukawa, M, Harada, Y (2007) The genetic structure of endangered indigenous populations of the amago salmon, Oncorhynchus masou ishikawae, in Japan. Conservation Genetics, 8, 1163–1176.
Keitt, TH (1997) Stability and complexity on a lattice: coexistence of species in an individual-based food web model. Ecological Modelling, 102, 243–258.
Keyghobadi, N, Unger, K, Weintraub, JD, Fonseca, DM (2006) Remnant populations of the regal fritillary (Speyeria idalia) in Pennsylvania: local genetic structure in a high gene flow species. Conservation Genetics, 7, 309–313.
Koizumi, I, Yamamoto, S, Maekawa, K (2006) Decomposed pairwise regression analysis of genetic and geographic distance reveals a metapopulation structure of stream-dwelling Dolly Varden charr. Molecular Ecology, 15, 3175–3189.
Kramer, AT, Ison, JL, Ashley, MV, Howe, HF (2008) The paradox of forest fragmentation genetics. Conservation Biology, 22, 878–885.
Kroll, JC (1980) Habitat requirements of the golden-cheeked warbler: management implications. Journal of Range Management, 33, 60–66.
Ladd, C, Gass, L (1999) Dendroica chrysoparia golden-cheeked warbler. Birds of North America, 420, 1–24.
Leberg, PL (1991) Influence of fragmentation and bottlenecks on genetic-divergence of wild turkey populations. Conservation Biology, 5, 522–530.
Leberg, PL (1992) Effects of population bottlenecks on genetic diversity as measured by allozyme electrophoresis. Evolution, 46, 477–494.
Leberg, PL (2002) Estimating allelic richness: effects of sample size and bottlenecks. Molecular Ecology, 11, 2445–2451.
Leberg, PL (2005) Genetic approaches for estimating the effective size of populations. Journal of Wildlife Management, 69, 1385–1399.
Lee, PLM, Luschi, P, Hays, GC (2007) Detecting female precise natal philopatry in green turtles using assignment methods. Molecular Ecology, 16, 61–74.
Lindsay, DL, Barr, KR, Lance, RF et al. (2008) Habitat fragmentation and genetic diversity of an endangered, migratory songbird, the golden-cheeked warbler (Dendroica chrysoparia). Molecular Ecology, 17, 2122–2133.
Louy, D, Habel, JC, Schmitt, T et al. (2007) Strongly diverging population genetic patterns of three skipper species: the role of habitat fragmentation and dispersal ability. Conservation Genetics, 8, 671–681.
Manel, S, Schwartz, MK, Luikart, G, Taberlet, P (2003) Landscape genetics: combining landscape ecology and population genetics. Trends in Ecology & Evolution, 18, 189–197.
Mills, S, Hunt, DH, Gomez, A (2007) Global isolation by distance despite strong regional phylogeography in a small metazoan. BMC Evolutionary Biology, 7, 1–10.
Morse, DH (1989) American Warblers: An Ecological and Behavioral Perspective. Harvard University Press, Cambridge, MA.
Nei, M, Maruyama, T, Chakraborty, R (1975) The bottleneck effect and genetic variability in populations. Evolution, 29, 1–10.
Olivieri, GL, Sousa, V, Chikhi, L, Radespiel, U (2008) From genetic diversity and structure to conservation: genetic signature of recent population declines in three mouse lemur species (Microcebus spp.). Biological Conservation, 141, 1257–1271.
Oyler, S, Leberg, PL (2005) Conservation genetics in wildlife biology. In: Research and Management Techniques for Wildlife Investigations and Management (ed. Braun, C), pp. 632–657. Wildlife Society, Washington, DC.
Packer, L, Taylor, JS, Savignano, DA et al. (1998) Population biology of an endangered butterfly, Lycaeides melissa samuelis (Lepidoptera; Lycaenidae): genetic variation, gene flow, and taxonomic status. Canadian Journal of Zoology-Revue Canadienne De Zoologie, 76, 320–329.
Pannell, JR, Charlesworth, B (2000) Effects of metapopulation processes on measures of genetic diversity. Philosophical Transactions of the Royal Society of London-Series B: Biological Sciences, 355, 1851–1864.
Pitra, C, D'Aloia M-A, , Lieckfeldt, D, Combreau, O (2004) Genetic variation across the current range of the Asian houbara bustard (Chlamydotis undulate macqueenii). Conservation Genetics, 5, 205–215.
Rappole, JH, King, DI, Diez, J (2003) Winter- vs. breeding-habitat limitation for an endangered avian migrant. Ecological Applications, 13, 735–742.
Reid, SM, Wilson, CC, Mandrak, NE, Carl, LM (2008) Population structure and genetic diversity of black redhorse (Moxostoma duquesnei) in a highly fragmented watershed. Conservation Genetics, 9, 531–546.
Rivers, NM, Butlin, RK, Altringham, JD (2005) Genetic population structure of Natterer's bats explained by mating at swarming sites and philopatry. Molecular Ecology, 14, 4299–4312.
Rousset, F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219–1228.
Sacks, BN, Ernest, HB, Boydston, EE (2006) San Francisco's golden gate: a bridge between historically distinct coyote (Canis latrans) populations?Western North American Naturalist, 66, 263–264.
Segelbacher, G, Höglund, J, Storch, I (2003) From connectivity to isolation: genetic consequences of population fragmentation in capercaillie across Europe. Molecular Ecology, 12, 1773–1780.
Segelbacher, G, Manel, S, Tomiuk, J (2008) Temporal and spatial analyses disclose consequences of habitat fragmentation on the genetic diversity in capercaillie (Tetrao urogallus). Molecular Ecology, 17, 2356–2367.
Shepard, DB, Kuhns, AR, Dreslik, MJ, Phillips, CA (2008) Roads as barriers to animal movement in fragmented landscapes. Animal Conservation, 11, 288–296.
Spencer, CC, Neigel, JE, Leberg, PL (2000) Experimental evaluation of the usefulness of microsatellite DNA for detecting demographic bottlenecks. Molecular Ecology, 9, 1517–1528.
Streiff, R, Audiot, P, Foucart, A, Lecoq, M, Rasplus, JY (2005) Genetic survey of two endangered grasshopper subspecies, Prionotropis hystrix rhodanica and Prionotropis hystrix azami (Orthoptera, Pampagidae): within- and between-population dynamics at the regional scale. Conservation Genetics, 7, 331–344.
Suarez, AV, Bolger, DT, Case, TJ (1998) Effects of fragmentation and invasion on native ant communities in coastal southern California. Ecology, 79, 2041–2056.
Templeton, A, Shaw, K, Routman, E, Davis, SK (1990) The genetic consequences of habitat fragmentation. Annals of the Missouri Botanical Garden, 77, 13–27.
Texas Parks and Wildlife Department (TPWD) (1995) Golden-cheeked warbler. PWD BK W7000–013.
Thomas, CD (2000) Dispersal and extinction in fragmented landscapes. Proceedings of the Royal Society of London-Series B: Biological Sciences, 267, 139–145.
Tilman, D, May, RM, Lehman, CL, Nowak, MA (1994) Habitat destruction and the extinction debt. Nature, 371, 65–66.
Uimaniemi, L, Orell, M, Kvist, L, Jokimäki, J, Lumme, J (2003) Genetic variation of the Siberian tit Parus cinctus populations at the regional level: a mitochondrial sequence analysis. Ecography, 26, 98–106.
Uimaniemi, L, Orell, M, Mönkkönen, M, Huhta, E, Jokimäki, J, Lumme, J (2000) Genetic diversity in the Siberian jay Perisoreus infaustus in fragmented old-growth forests of Fennoscandia. Ecography, 23, 669–677.
U.S. Fish and Wildlife Service (USFWS) (1992) Golden-cheeked Warbler (Dendroica chrysoparia) Recovery Plan (ed. Keddy-Hector, DF), p. 97. USFWS, Albuquerque, NM.
USFWS (1996) Golden-cheeked warbler population and habitat viability assessment report.
USFWS (2004) Biological Opinion, Consultation Number 2-12-05-F-021.
USFWS (2005) Biological Opinion, Consultation Number 2-15-2004-F-0266.
Van Rossum, F, De Sousa, SC, Triest, L (2004) Genetic consequences of habitat fragmentation in an agricultural landscape on the common Primula veris, and comparison with its rare congener, P. vulgaris. Conservation Genetics, 5, 231–245.
Veit, ML, Robertson, RJ, Hamel, PB, Friesen, VL (2005) Population genetic structure and dispersal across a fragmented landscape in cerulean warblers (Dendroica cerulea). Conservation Genetics, 6, 159–174.
Wahl, R, Diamond, D, Shaw, D (1990) The golden-cheeked warbler: a status review. Final report submitted to Office of Endangered Species. USFWS, Albuquerque, NM.
Waples, RS (1998) Separating the wheat from the chaff: patterns of genetic differentiation in high gene flow species. Journal of Heredity, 89, 438–450.
Waples, RS, Gaggiotti, O (2006) What is a population? An empirical study of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology, 15, 1419–1439.
Ware, D, Greis, J (2002) Southern Forest Resource Assessment. USDA Forest Service.
Waser, PM, Busch, JD, McCormick, CR, DeWoody, JA (2006) Parentage analysis detects cryptic precapture dispersal in a philopatric rodent. Molecular Ecology, 15, 1929–1937.
Watson, DM (2003) Long-term consequences of habitat fragmentation – highland birds in Oaxaca, Mexico. Biological Conservation, 111, 283–303.
Wilkins, N, Powell, RA, Conkey, A, Snelgrove, AG (2006) Population status and threat analysis for the black-capped vireo. US Fish and Wildlife Service, Region 2, Albuquerque, NM.
Wimberly, MC (2006) Species dynamics in disturbed landscapes: when does a shifting habitat mosaic enhance connectivity?Landscape Ecology, 21, 35–46.
Wright, S (1931) Evolution in Mendelian populations. Genetics, 16, 97–159.
Wright, S (1943) Isolation by distance. Genetics, 28, 114–138.
Wright, S (1968) The theory of gene frequencies. In: Evolution and the Genetics of Populations, p. 511. The University of Chicago Press, Chicago.
Young, A, Boyle, T, Brown, T (1996) The population genetic consequences of habitat fragmentation for plants. Trends in Ecology & Evolution, 11, 413–418.
Zhan, XJ, Zhang, ZJ, Wu, H et al. (2007) Molecular analysis of dispersal in giant pandas. Molecular Ecology, 16, 3792–3800.