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The genetic divergence of Oratosquilla oratoria between the East China Sea and Yellow Sea: physical barrier and possible local adaptation

  • Wenbin Zhu (a1) (a2), Xinwei Du (a3), Zhiqiang Han (a3) and Hanxiang Xu (a3)

In order to confirm the genetic relationship between the Yellow Sea and East China Sea populations of mantis shrimps Oratosquilla oratoria, fragments of mitochondrial DNA COI gene samples were analysed. A total of 212 individuals from nine localities in the East China Sea and Yellow Sea were collected and 108 haplotypes were detected. Neighbour-joining analysis revealed a complete genetic break between the Yellow Sea and East China Sea, which was consistent with the previous mtDNA 16S rRNA. Pleistocene isolation and the current physical barrier were responsible for the complete genetic break between the East China Sea and Yellow Sea. Furthermore, local adaptation in the COI gene may also be contributed to by the genetic differentiation between the populations of the Yellow Sea and East China. The different Ka/Ks ratios between the two clades may reflect different selection pressures and local adaptation on the fragment of COI gene.

Corresponding author
Correspondence should be addressed to: H. Xu Fishery College, Zhejiang Ocean University, Zhoushan 316022, China email:
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Avise, J.C. (2000) Phylogeography: the history and formation of species. Cambridge, MA: Harvard University Press.
Bandelt, H.J., Forster, P., Sykes, B.C. and Richards, M.B. (1995) Mitochondrial portraits of human populations using median networks. Genetics 141, 743753.
Dong, Y.W., Wang, H.S., Han, G.D., Ke, C.H., Zhan, X., Nakano, T. and Williams, G.A. (2012) The impact of Yangtze River discharge, ocean currents and historical events on the biogeographic pattern of Cellana toreuma along the China coast. PLoS ONE 7, e36178.
Du, X.W., Cai, S.S., Yu, C.G., Jiang, X.Q., Lin, L.S., Gao, T.X. and Han, Z.Q. (2016) Population genetic structure of mantis shrimps Oratosquilla oratoria: testing the barrier effect of the Yangtze River outflow. Biochemical Systematics and Ecology 66, 1218.
Excoffier, L. and Lischer, H.E. (2010) Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10, 564567.
Felsenstein, J. (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783791.
Folmer, O., Black, M., Hoeh, W., Lutz, R. and Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3, 294299.
Fu, Y.X. (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147, 915925.
Hamano, T. and Matsuura, S. (1987) Egg size, duration of incubation, and larval development of the Japanese mantis shrimp in the laboratory. Nippon Suisan Gakkaishi 53, 2339.
Han, Z.Q., Gao, T.X., Yanagimoto, T. and Sakurai, Y. (2008) Deep phylogeographic break among white croaker Pennahia argentata (Sciaenidae, Perciformes) populations in North-western Pacific. Fisheries Science 74, 770780.
Han, Z.Q., Yanagimoto, T., Zhang, Y.P. and Gao, T.X. (2012) Phylogeography study of Ammodytes personatus in Northwestern Pacific: Pleistocene isolation, temperature and current conducted secondary contact. PLoS ONE 7, e37425.
Han, Z.Q., Zhu, W.B., Zheng, W., Li, P.F. and Shui, B.N. (2015) Significant genetic differentiation between the Yellow Sea and East China Sea populations of cocktail shrimp Trachypenaeus curvirostris revealed by the mitochondrial DNA COI gene. Biochemical Systematics and Ecology 59, 7884.
Kenchington, E.L., Patwary, M.U., Zouros, E. and Bird, C.J. (2006) Genetic differentiation in relation to marine landscape in a broadcast-spawning bivalve mollusc (Placopecten magellanicus). Molecular Ecology 15, 17811796.
Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16, 111120.
Lessios, H.A., Kane, J. and Robertson, D.R. (2003) Phylogeography of the pantropical sea urchin Tripneustes: contrasting patterns of population structure between oceans. Evolution 57, 20262036.
Liu, H.Y., Wang, D.X., Jiang, Y.S. and Chen, L. (2012) The effects of salinity on survival and food intake in mantis shrimp Oratosquilla oratoria larvae. Journal of Dalian Ocean University 27, 311314.
Liu, H.Y., Xu, H.L. and Lin, Y.J. (2006) The effect of salinity on survival and growth mantis shrimp (Oratosquilla oratoria) in Dalian coast. Journal of Dalian Ocean University 21, 180183.
Liu, J.X., Gao, T.X., Wu, S.F. and Zhang, Y.P. (2007) Pleistocene isolation in the Northwestern Pacific marginal seas and limited dispersal in a marine fish, Chelon haematocheilus (Temminck & Schlegel, 1845). Molecular Ecology 16, 275288.
Liu, Y. and Cui, Z. (2010) The complete mitochondrial genome of the mantid shrimp Oratosquilla oratoria (Crustacea: Malacostraca: Stomatopoda): novel non-coding regions features and phylogenetic implications of the Stomatopoda. Comparative Biochemistry & Physiology Part D Genomics & Proteomics 5, 190198.
Lui, K.K.Y., Leung, P.T.Y., Ng, W.C. and Leung, K.M.Y. (2010) Genetic variation of Oratosquilla oratoria (Crustacea: Stomatopoda) across Hong Kong waters elucidated by mitochondrial DNA control region sequences. Journal of the Marine Biological Association of the United Kingdom 90, 623631.
Muss, A., Robertson, D.R., Stepien, C.A., Wirtz, P. and Bowen, B.W. (2001) Phylogeography of Ophioblennius: the role of ocean currents and geography in reef fish evolution. Evolution 55, 561572.
Nei, M. (1987) Molecular evolutionary genetics. New York, NY: Columbia University Press.
Ni, G., Li, Q., Kong, L. and Yu, H. (2014) Comparative phylogeography in marginal seas of the northwestern Pacific. Molecular Ecology 23, 534548.
Ni, G., Li, Q., Kong, L. and Zheng, X. (2012) Phylogeography of bivalve Cyclina sinensis: testing the historical glaciations and Changjiang River outflow hypotheses in Northwestern Pacific. PLoS ONE 7, e49487.
Palumbi, S.R. (1992) Marine speciation on a small planet. Trends in Ecology and Evolution 7, 114118.
Posada, D. (2008) jModeltest: phylogenetic model averaging. Molecular Biology and Evolution 25, 12531256.
Rocha, L.A., Bass, A.L., Robertson, D.R. and Bowen, B.W. (2002) Adult habitat preferences, larval dispersal, and the comparative phylogeography of three Atlantic surgeonfishes (Teleostei: Acanthuridae). Molecular Ecology 11, 243252.
Rogers, A.R. and Harpending, H. (1992) Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9, 552569.
Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406425.
Shen, K.N., Jamandre, W.B., Hsu, C.C., Tzeng, W.N. and Durand, J.D. (2011) Plio-Pleistocene sea level and temperature fluctuations in the northwestern Pacific promoted speciation in the globally-distributed flathead mullet Mugil cephalus . BMC Evolution Biology 11, 83.
Shen, Y.Y., Shi, P., Sun, Y.B. and Zhang, Y.P. (2009) Relaxation of selective constraints on avian mitochondrial DNA following the degeneration of flight ability. Genome Research 19, 17601765.
Silva, G., Lima, F.P., Martel, P. and Castilho, R. (2014) Thermal adaptation and clinal mitochondrial DNA variation of European anchovy. Proceedings of the Royal Society B: Biological Sciences 281, 20141093.
Song, N., Zhang, X.M., Sun, X.F., Yanagimoto, T. and Gao, T.X. (2010) Population genetic structure and larval dispersal potential of spottedtail goby Synechogobius ommaturus in the North-west Pacific. Journal of Fish Biology 77, 388402.
Sun, Y.B., Shen, Y.Y., Irwin, D.M. and Zhang, Y.P. (2010) Evaluating the roles of energetic functional constraints on teleost mitochondrial-encoded protein evolution. Molecular Biology Evolution 28, 3944.
Tajima, F. (1989) Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585595.
Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30, 27252729.
Wang, B., Chen, X.L. and Sun, P.X. (1998) On biological characters and artificial seedling-rearing techniques of mantis shrimp (Oratosquilla oratoria). Journal of Oceanography Huang 16, 1213.
Yamasaki, M. (1988) The ecological study of mantis shrimp Oratosquilla oratoria (deHaan) with reference to its bio-production processes. Bulletin of Seikai National Fisheries Research Institute 66, 69100.
Yang, Z. (2007) PAML 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution 24, 15861591.
Zhang, D., Ding, G., Ge, B., Zhang, H., Tang, B. and Yang, G. (2014) Comparative phylogeography of two marine species of crustacean: recent divergence and expansion due to environmental changes. Gene 550, 141147.
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Journal of the Marine Biological Association of the United Kingdom
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