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The taxonomy of the genus Graphis sensu Staiger (Ascomycota: Ostropales: Graphidaceae)

  • Robert LÜCKING (a1)
Abstract
Abstract

The species-level taxonomy of the genus Graphis sensu Staiger was revised using numerical taxonomy and cladistic techniques. In its current circumscription, Graphis includes more than 300 species and is characterized by lirellae with well-developed, carbonized labia usually concealing the disc and usually hyaline, I+ blue-violet, transversely septate to muriform ascospores. The study analyzed the importance of morphological, anatomical, and chemical characters for taxonomic purposes in the genus, both at species level and at the level of species groups and lineages. A phenotype-based cladistic analysis, combined with a novel method to estimate the degree of character state homoplasies prior to a cladogram, as well as a species ordination using non-metric multidimensional scaling (NMS), was performed to assess the delimitation of potentially natural groups within the genus. Contrary to previous views, the most important character complex characterizing potentially natural groups in the genus Graphis is lirellae morphology, whereas labia striation, excipulum carbonization, ascospore features, and secondary chemistry, vary greatly even in closely related species. Based on these findings, Wirth and Hale's concept of ‘sporomorphs’ is emended to generally characterize morphologically similar species that differ in a single character, such as labia striation (‘labiomorph’), excipulum carbonization (‘excipulomorph’), hymenium inspersion (‘inspersomorph’), ascospore size and septation (‘sporomorph’) and secondary chemistry (‘chemomorph’).

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Adawadkar B. & Makhija U. (2006) New species and new records of Graphis from India: transseptate species with completely carbonized exciples and norstictic acid. Mycotaxon 96: 5160.
Adawadkar B. & Makhija U. (2007) New species and new records of Graphis from India with partially carbonized exciples and transseptate ascospores. Mycotaxon 99: 303326.
Aptroot A., Lücking R., Sipman H. J. M., Umaña L. & Chaves J. L. (2008) Pyrenocarpous lichens with bitunicate asci. A first assessment of the lichen biodiversity inventory in Costa Rica. Bibliotheca Lichenologica 97: 1162.
Archer A. W. (1999) The lichen genera Graphis and Graphina (Graphidaceae) in Australia 1. Species based on Australian type specimens. Telopea 8: 273295.
Archer A. W. (2000) The lichen genera Phaeographis and Phaeographina (Graphidaceae) in Australia. 1. Species based on Australian type specimens. Telopea 8: 461475.
Archer A. W. (2001 a) New taxa and new reports in the lichen family Graphidaceae (Ascomycotina) from Australia. Mycotaxon 80: 367374.
Archer A. W. (2001 b) The lichen genera Phaeographis and Phaeographina (Graphidaceae) in Australia 2. Phaeographina – new reports and new species. Telopea 9: 329344.
Archer A. W. (2001 c) The lichen genera Phaeographis and Phaeographina (Graphidaceae) in Australia 3. Phaeographis – new reports and new species. Telopea 9: 663677.
Archer A. W. (2001 d) The lichen genus Graphis (Graphidaceae) in Australia. Australian Systematic Botany 14: 245271.
Archer A. W. (2001 e) The lichen genus Graphina (Graphidaceae) in Australia: new reports and new species. Mycotaxon 77: 153180.
Archer A. W. (2003 a) Graphina streblocarpa, Graphina subserpentina (Graphidaceae, lichenised Ascomycota) and their synonyms. Mycotaxon 86: 3136.
Archer A. W. (2003 b) New species in the lichen family Graphidaceae (Ascomycota) from Australia and the Solomon Islands. Mycotaxon 88: 143148.
Archer A. W. (2005) Australian species in the genus Diorygma (Graphidaceae). Australasian Lichenology 56: 1112.
Archer A. W. (2006) The lichen family Graphidaceae in Australia. Bibliotheca Lichenologica 94: 1191.
Archer A. W. (2007) Additional lichen records from Australia 63. Australasian Lichenology 61: 67.
Awasthi D. D. (1991) A key to the microlichens of India, Nepal and Sri Lanka. Bibliotheca Lichenologica 40: 1340.
Awasthi D. D. & Joshi M. (1979) The lichen genera Helminthocarpon, Cyclographa, and Cyclographina (gen. nov.). Norwegian Journal of Botany 26: 165177.
Awasthi D. D. & Singh K. P. (1975) Observations on some graphidaceous lichen taxa. Phyta 1: 3440.
Clements F. E. (1909) The Genera of Fungi. Minneapolis.
Crisp M. D. & Chandler G. T. (1996) Paraphyletic species. Telopea 6: 813844.
Culberson C. F. (1972) Improved conditions and new data for the identification of lichen products by a standardized thin-layer chromatographic method. Journal of Chromatography 72: 113125.
Culberson C. F. & Kristinsson H. (1970) A standardized method for the identification of lichen products. Journal of Chromatography 46: 8593.
Dodge C. W. (1966) New lichens from Chile. Nova Hedwigia 12: 307352.
Dress A. W., Flamm C., Fritzsch G., Grünewald S., Kruspe M., Prohaska S. J. & Stadler P. F. (2008) Noisy: identification of problematic columns in multiple sequence alignments. Algorithms for Molecular Biology 3: 7(online: doi:10.1186/1748-7188-3-7).
Frisch A., Kalb K. & Grube M. (2006) Contributions towards a new systematics of the lichen family Thelotremataceae. Bibliotheca Lichenologica 92: 1556.
Funk D. A. & Omland K. E. (2003) Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology, Evolution, and Systematics 34: 397423.
Hafellner J. (1984) Studien in Richtung einer naturlicheren Gliederung der Sammelfamilien Lecanoraceae und Lecideaceae. Beiheft zur Nova Hedwigia 79: 241371.
Hale M. E. Jr. (1974) Morden-Smithsonian Expedition to Dominica: the lichens (Thelotremataceae). Smithsonian Contributions to Botany 16: 146.
Hale M. E. Jr. (1978) A revision of the lichen family Thelotremataceae in Panama. Smithsonian Contributions to Botany 38: 160.
Hale M. E. Jr. (1980) Generic delimitation in the lichen family Thelotremataceae. Mycotaxon 11: 130138.
Hale M. E. Jr. (1981) A revision of the lichen family Thelotremataceae in Sri Lanka. Bulletin of the British Museum (Natural History), Botany Series 8: 227332.
Harris R. C. (1989) A sketch of the family Pyrenulaceae (Melanommatales) in eastern North America. Memoirs of the New York Botanical Garden 49: 74107.
Harris R. C. (1990) Some Florida Lichens. Bronx, N.Y.: Published by the Author.
Harris R. C. (1995) More Florida Lichens. Including the 10ø Tour of the Pyrenolichens. Bronx, N.Y.: Published by the Author.
Hawksworth D. L. (1976) Lichen chemotaxonomy. In Lichenology: Progress and Problems (Brown D. H., Hawksworth D. L. & Bailey R. H., eds): 139184. London: Academic Press.
Henssen A. & Jahns H. M. (1974) Lichenes. Stuttgart: Georg Thieme.
Herrera-Campos M. A., Huhndorf S. & Lücking R. (2005) The foliicolous lichen flora of Mexico IV: a new foliicolous species of Pyrenothrix (Chaetothyriales: Pyrenothrichaceae). Mycologia 97: 356361.
Kalb K. & Staiger B. (2000) Dyplolabia Massalongo. Monographie einer vergessenen Flechtengattung. Hoppea 61: 409422.
Kalb K., Staiger B. & Elix J. A. (2004) A monograph of the lichen genus Diorygma – a first attempt. Symbolae Botanicae Upsalienses 34(1):133181.
Kirk P. M., Cannon P. F., Minter D. W. & Stalpers J. A. (2008) Ainsworth & Bisby's Dictionary of the Fungi. 10th edition. Wallingford, Oxon: CAB International.
Lücking R. (2007) Kalbographa: Monografie einer unerkannten Flechtengattung. Bibliotheca Lichenologica 96: 185192.
Lücking R. (2008) Foliicolous lichenized fungi. Flora Neotropopica Monograph 103: 1867.
Lücking R. & Rivas Plata E. (2008) Clave y guía ilustrada para géneros de Graphidaceae. Glalia 1: 141.
Lücking R., Sérusiaux E. & Vězda A. (2005) Phylogeny and systematics of the lichen family Gomphillaceae (Ostropales) inferred from cladistic analysis of phenotype data. Lichenologist 37: 123170.
Lücking R., Kalb K., Staiger B. & McNeill J. (2007) Proposal to conserve the name Phaeographis, with a conserved type, against Creographa, Ectographis, Flegographa, Hymenodecton, Platygramma, and Pyrographa (Ascomycota: Ostropales: Graphidaceae), along with notes on the names Graphina and Phaeographina. Taxon 56: 12961299.
Lücking R., Chaves J. L., Sipman H. J. M., Umaña L. & Aptroot A. (2008 a) A first assessment of the Ticolichen biodiversity inventory in Costa Rica: the genus Graphis, with notes on the genus Hemithecium (Ascomycota: Ostropales: Graphidaceae). Fieldiana (Botany), New Series 46: 1131.
Lücking R., Del Prado R., Lumbsch H. T., Will-Wolf S., Aptroot A., Sipman H. J. M., Umaña L., and Chaves J. L. (2008 b) Phylogenetic patterns of morphological and chemical characters and reproductive mode in the Heterodermia obscurata group in Costa Rica (Ascomycota, Physciaceae). Systematics and Biodiversity 6: 3141.
Lücking R., Archer A. W. & Aptroot A. (2009) A world-wide key to the genus Graphis (Ostropales: Graphidaceae). Lichenologist 41: 363452.
Lumbsch H. T. (1998) The use of metabolic data in lichenology at the species and subspecific levels. Lichenologist 30: 357367.
Lumbsch H. T. (2002) Analysis of phenolic products in lichens for identification and taxonomy. In Protocols in Lichenology. Culturing, Biochemistry, Ecophysiology and Use in Biomonitoring (Kranner I., Beckett R. P. & Varma A. K., eds): 281295. Berlin, Heidelberg: Springer.
Lumbsch H. T., Mangold A., Martín M. P. & Elix J. A. (2008 a) Species recognition and phylogeny of Thelotrema species in Australia (Ostropales, Ascomycota). Australian Systematic Botany 21:217227.
Lumbsch H. T., Nelsen M. P. & Lücking R. (2008 b) The phylogenetic position of Haematommataceae (Lecanorales, Ascomycota), with notes on secondary chemistry and species delimitation. Nova Hedwigia 86: 105114.
Maddison W. P. & Maddison D. R. (2008) Mesquite: a Modular System for Evolutionary Analysis. Version 2.5. http://mesquiteproject.org.
Makhija U. & Adawadkar B. (2005 a) Some additions to the Graphidaceae in the Andaman Islands, India. Mycotaxon 91: 347352.
Makhija U. & Adawadkar B. (2005 b) Some new species of Graphis (lichenised Ascomycota) from the Andaman and Nicobar Islands of India. Mycotaxon 91: 369379.
Makhija U., Dube A., Adawadkar B. & Chitale G. (2005) Five trans-septate species of Hemithecium from India. Mycotaxon 93: 365372.
Mangold A. (2008) Taxonomic studies on members of thelotrematoid Ostropales (lichenized Ascomycota) in Australia. Ph.D. Thesis, Universität Duisburg-Essen.
Mangold A., Martín M. P., Lücking R. & Lumbsch H. T. (2008) Molecular phylogeny places Thelotremataceae within Graphidaceae (Ascomycota: Ostropales). Taxon 57: 476486.
Mangold A., Elix J. A. & Lumbsch H. T. (2009) Thelotremataceae. Flora of Australia (in press).
McCune B. & Grace J. B. (2002). Analysis of Ecological Communities. Gleneden Beach, Oregon: MjM Software Design.
McCune B. & Mefford M. J. (1999) PC-ORD. Multivariate Analysis of Ecological Data. Version 4. Gleneden Beach, Oregon: MjM Software Design.
McDonald T., Miądlikowska J. & Lutzoni F. (2003) The lichen genus Sticta in the Great Smoky Mountains: a phylogenetic study of morphologial, chemical, and molecular data. Bryologist 106: 6179.
Miądlikowska J. & Lutzoni F. (2000) Phylogenetic revision of the genus Peltigera (lichen-forming Ascomycota) based on morphological, chemical, and large subunit nuclear ribosomal DNA data. International Journal of Plant Science 161: 925958.
Müller Argoviensis J. (1880) Lichenologische Beiträge X. Flora 63: 1724, 4045.
Müller Argoviensis J. (1882) Lichenologische Beiträge XV. Flora 65: 291306, 313322, 326337, 381386, 397402.
Müller Argoviensis J. (1887) Lichenologische Beiträge XXV. Flora 70: 5664, 7480.
Müller Argoviensis J. (1891) Lichenes Brisbanenses a cl. F. M. Bailey, Gouvernment Botanist, prope Brisbane (Queensland) in Australia orientali lecti. Nuovo Giornale Botanico Italiano 23: 385404.
Myllys L., Stenroos S., Thell A. & Ahti T. (2003) Phylogeny of bipolar Cladonia arbuscula and Cladonia mitis (Lecanorales, Euascomycetes). Molecular Phylogenetics and Evolution 27: 5869.
Nagarkar M. B. & Patwardhan P. G. (1982) Notes on some lichens from North East India IV: Genus Graphis. Biovigyanam 8: 125131.
Nakanishi M. (1966) Taxonomical studies on the family Graphidaceae of Japan. Journal of Science of the Hiroshima University, Series B, Division 2 (Botany) 11: 51126.
Nakanishi M., Kashiwadani H. & Moon K. H. (2003 a) New species of Graphis, Phaeographina and Sarcographa (Ascomycotina, Graphidaceae) from Vanuatu. Bulletin of the National Science Museum (Tokyo), Series B (Botany) 28: 107111.
Nakanishi M., Kashiwadani H. & Moon K. H. (2003 b) Taxonomical notes on Japanese Graphidaceae (Ascomycotina), including some new combinations. Bulletin of the National Science Museum (Tokyo), Series B (Botany) 29: 8390.
Nylander W. (1891) Sertum Lichenaeae Tropicae e Labuan et Singapore. Paris: Schmidt.
Patwardhan P. G. & Kulkarni C. R. (1976) Some additions to the lichen flora of India. IV: Graphis and Graphina (family Graphidaceae). Biovigyanam 2: 123132.
Patwardhan P. G. & Kulkarni C. R. (1977) Some additions to the lichen flora of India. V. Genera Phaeographis and Phaeographina (family: Graphidaceae). Current Science 46: 720721.
Patwardhan P. G. & Kulkarni C. R. (1979 a) Some new taxa of the family Graphidaceae from Western Ghats, southwestern India. Norwegian Journal of Botany 26: 4552.
Patwardhan P. G. & Kulkarni C. R. (1979 b) The lichen genus Phaeographina (family Graphidaceae) in the Western Ghats, Southwestern India. Indian Journal of Botany 2: 132143.
Patwardhan P. G. & Kulkarni C. R. (1979 c) Three new species of Graphina of the Graphina multistriata complex. Biovigyanam 5: 58.
Patwardhan P. G. & Nagarkar M. B. (1979) Notes on some lichens from North East India I: Family Graphidaceae. Biovigyanam 5: 131138.
Poe S. & Wiens J. J. (2000) Character selection and the methodology of morphological phylogenetics. In Phylogenetic Analysis of Morphological Data (Wiens J. J., ed.): 2036. Washington, D.C.: Smithsonian Institution Press.
Redinger K. (1933) Die Graphidineen der ersten Regnell'schen Expedition nach Brasilien 1892–95. I. Glyphis, Medusulina und Sarcographa. Arkiv för Botanik 25A(13):120.
Redinger K. (1934) Die Graphidineen der ersten Regnell'schen Expedition nach Brasilien 1892–94 II. Graphina und Phaeographina. Arkiv för Botanik 26A(1):1105.
Redinger K. (1935) Die Graphidineen der ersten Regnell'schen Expedition nach Brasilien 1892–94. III. Graphis und Phaeographis, nebst einem Nachtrage zu Graphina. Arkiv för Botanik 27A(3):1103.
Santesson R. (1952) Foliicolous lichens I. A revision of the taxonomy of the obligately foliicolous, lichenized fungi. Symbolae Botanicae Upsalienses 12(1):1590.
Sherwood M. A. (1977) The ostropalean fungi. Mycotaxon 5: 1277.
Sipman H. J. M. & Harris R. C. (1989) Lichens. In Tropical Rain Forest Ecosystems Biogeographical and Ecological Studies (Ecosystems of the World 14B). (Lieth H. & Werger M. J. A., eds): 303309. Amsterdam: Elsevier.
Staiger B. (2002) Die Flechtenfamilie Graphidaceae. Studien in Richtung einer natürlicheren Gliederung. Bibliotheca Lichenologica 85: 1526.
Staiger B. & Kalb K. 1999. Acanthothecis and other graphidoid lichens with warty periphysoids or paraphysis-tips. Mycotaxon 73: 69134.
Staiger B., Kalb K. & Grube M. (2006) Phylogeny and phenotypic variation in the lichen family Graphidaceae (Ostropomycetidae, Ascomycota). Mycological Research 110: 765772.
Stocker-Wörgötter E., Elix J. A. & Grube M. (2004) Secondary chemistry of lichen-forming fungi: chemosyndromic variation and DNA-analyses of cultures and chemotypes in the Ramalina farinacea complex. Bryologist 107: 152162.
Swofford D. L. (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Sunderland, Massachussetts: Sinauer Associates.
Tehler A. & Källersjö M. (2001) Parmeliopsis ambigua and P. hyperopta (Parmeliaceae): species or chemotypes? Lichenologist 33: 403408.
Vainio E. A. (1890) Etude sur la classification et la morphologie des lichens du Brésil, I. Acta Societatis pro Fauna et Flora Fennica 7: VXXIX, 1247.
Vainio E. A. (1921) Lichenes Insularum Philippinarum III. Acta Societatis Scienciarum Fennicae 15: 1368.
Walker F. J. & James P. W. (1980) A revised guide to microchemical techniques for the identification of lichen products. British Lichen Society Bulletin 46 (supplement):1329.
Watson W. (1929) The classification of lichens I & II. New Phytologist 28: 136, 85116.
Wiley E. O. & Mayden R. L. (2000) The evolutionary species concept. In Species Concepts and Phylogenetic Systematics. (Wheeler Q. & Meier R., eds): 7089. New York: Columbia University Press.
Wiley E. O., Siegel-Causey D., Brooks D. R. & Funk V. A. (1991) The Compleat Cladist. Lawrence: University of Kansas Museum of Natural History.
Wirth M. & Hale M. E. Jr. (1963) The lichen family Graphidaceae in Mexico. Contributions from the U.S. National Herbarium 36: 63119.
Wirth M., and Hale M. E. Jr. (1978) Morden-Smithsonian Expedition to Dominica: the lichens (Graphidaceae). Smithsonian Contributions to Botany 40: 164.
Zahlbruckner A. (1907) Flechten. Spezieller Teil. In Engler A. & Prantl H., Die Natürlichen Pflanzenfamilien 1(1):49249. Leipzig: Engelmann.
Zahlbruckner A. (1923) Catalogus Lichenum Universalis III. Leipzig.
Zahlbruckner A. (1926) Flechten. Spezieller Teil. In Die Natürlichen Pflanzenfamilien 2(8) (Engler A. & Prantl H., eds): 61270. Leipzig: Engelmann.
Zander R. H. (2007) Paraphyly and the species concept, a reply to Ebach et al. Taxon 56: 642644.
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