Hostname: page-component-5d84bcc8dc-jm5vp Total loading time: 0 Render date: 2026-09-10T12:22:17.943Z Has data issue: false hasContentIssue false
  • English
  • Français

Weedy rice (Oryza spp.) diversity in southern Brazil

Published online by Cambridge University Press:  22 March 2021

Leonard Bonilla Piveta Open the ORCID record for Leonard Bonilla Piveta [Opens in a new window] ,
José Alberto Noldin Open the ORCID record for José Alberto Noldin [Opens in a new window] ,
Nilda Roma-Burgos Open the ORCID record for Nilda Roma-Burgos [Opens in a new window] ,
Vívian Ebeling Viana Open the ORCID record for Vívian Ebeling Viana [Opens in a new window] ,
Lariza Benedetti Open the ORCID record for Lariza Benedetti [Opens in a new window] ,
Jesus Juares Oliveira Pinto Open the ORCID record for Jesus Juares Oliveira Pinto [Opens in a new window] ,
Fabiane Pinto Lamego Open the ORCID record for Fabiane Pinto Lamego [Opens in a new window]  and
Luis Antonio de Avila Open the ORCID record for Luis Antonio de Avila [Opens in a new window]
Leonard Bonilla Piveta
Affiliation:
Former Graduate Student, Crop Protection Graduate Program, Federal University of Pelotas, Pelotas, RS, Brazil; current: Program Associate, University of Arkansas
José Alberto Noldin*
Affiliation:
Weed Science Researcher, Epagri–Institution for Agricultural Research and Rural Extension for Santa Catarina State/Itajai Experimental Station, Brazil
Nilda Roma-Burgos*
Affiliation:
Professor, Department of Crop, Soil and Environmental Sciences, University of Arkansas, Fayetteville, AR, USA
Vívian Ebeling Viana
Affiliation:
Postdoctoral Research Associate, Crop Protection Graduate Program, Federal University of Pelotas, Pelotas, RS, Brazil
Lariza Benedetti
Affiliation:
Postdoctoral Research Associate, Crop Protection Graduate Program, Federal University of Pelotas, Pelotas, RS, Brazil
Jesus Juares Oliveira Pinto
Affiliation:
Emeritus Professor, Crop Protection Graduate Program, Federal University of Pelotas, Pelotas, RS, Brazil
Fabiane Pinto Lamego
Affiliation:
Weed Researcher, Embrapa, Bagé, RS, Brazil; and Adjunct Professor, Crop Protection Graduate Program, Federal University of Pelotas, Pelotas, RS, Brazil
Luis Antonio de Avila*
Affiliation:
Associate Professor, Crop Protection Graduate Program, Federal University of Pelotas, Pelotas, RS, Brazil
*
Authors for correspondence: José Alberto Noldin, Epagri - Rodovia Antônio Heil, 6800 - Itaipava, Itajaí - SC, 88318-112, Brazil (Email: noldin@epagri.sc.gov.br); Nilda Roma-Burgos, University of Arkansas, 1366 W. Altheimer Drive, Fayetteville, AR 72704 (Email: nburgos@uark.edu); Luis Antonio de Avila, Departamento de Fitossanidade, Universidade Federal de Pelotas, Campus Universitário, S/N, Capão do Leão - RS, 96160-000, Brazil. (Email: laavilabr@gmail.com)
Authors for correspondence: José Alberto Noldin, Epagri - Rodovia Antônio Heil, 6800 - Itaipava, Itajaí - SC, 88318-112, Brazil (Email: noldin@epagri.sc.gov.br); Nilda Roma-Burgos, University of Arkansas, 1366 W. Altheimer Drive, Fayetteville, AR 72704 (Email: nburgos@uark.edu); Luis Antonio de Avila, Departamento de Fitossanidade, Universidade Federal de Pelotas, Campus Universitário, S/N, Capão do Leão - RS, 96160-000, Brazil. (Email: laavilabr@gmail.com)
Authors for correspondence: José Alberto Noldin, Epagri - Rodovia Antônio Heil, 6800 - Itaipava, Itajaí - SC, 88318-112, Brazil (Email: noldin@epagri.sc.gov.br); Nilda Roma-Burgos, University of Arkansas, 1366 W. Altheimer Drive, Fayetteville, AR 72704 (Email: nburgos@uark.edu); Luis Antonio de Avila, Departamento de Fitossanidade, Universidade Federal de Pelotas, Campus Universitário, S/N, Capão do Leão - RS, 96160-000, Brazil. (Email: laavilabr@gmail.com)
Get access Rights & Permissions [Opens in a new window]

Abstract

Weedy rice (Oryza spp.) is one of the most troublesome weeds affecting rice (Oryza sativa L.) production in many countries. Weedy rice control is difficult in rice fields, because the weed and crop are phenotypically and morphologically similar. Weedy rice can be a source of genetic diversity for cultivated rice. Thus, this study aimed to characterize the morphological diversity of weedy rice in southern Brazil. Qualitative and quantitative traits of 249 accessions from eight rice-growing mesoregions in Rio Grande do Sul (RS) and Santa Catarina (SC) states were analyzed. For each accession, 24 morphological descriptors (14 qualitative and 10 quantitative) were evaluated. All 249 accessions from RS and SC are of indica lineage. Considering all the phenotypic traits evaluated, the accessions separated into 14 distinct groups. One of the largest groups consisted of plants that were predominantly tall with green leaves, intermediate shattering, and variable flowering time. Distinct subgroups exist within larger clusters, showing discernible phenotypic diversity within the main clusters. The variability in flowering time was high (77 to 110 d after emergence), indicating high potential for flowering synchrony with rice cultivars and, consequently, gene flow. This indicates the need to remove escapes when planting herbicide-resistant rice. Thus, weedy rice populations in southern Brazil are highly diverse, and this diversity could result in variable response to weed management.

Keywords

Cluster analysismorphological characterizationphenological diversityplant traitsred rice

Information

Type
Special Issue Article
Information
Weed Science , Volume 69 , Issue 5 , September 2021 , pp. 547 - 557
Check for updates
Copyright
© The Author(s), 2021. Published by Cambridge University Press on behalf of the Weed Science Society of America

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

Article purchase

Temporarily unavailable

Footnotes

Associate Editor: William Vencill, University of Georgia

References

Avila, LA, Andres, A, Marchezan, E, Menezes, VG (2000) Banco de sementes de arroz vermelho em sistemas de semeadura de arroz irrigado. Ciênc Rural 30:773–777 CrossRefGoogle Scholar
Bevilacqua, C, Basu, S, Pereira, A, Tseng, TM, Zimmer, PD, Burgos, NR (2015) Analysis of stress-responsive gene expression in cultivated and weedy rice differing in cold stress tolerance. PLoS ONE 10:e0132100 CrossRefGoogle ScholarPubMed
Bing, Y, Wei-Ya, X, Li-Jun, L, Yong-Zhong, X (2006) QTL analysis for flag leaf characteristics and their relationships with yield and yield traits in rice. Acta Genetica Sinica 33:824–832 Google Scholar
Bocchi, S, Vandoni, G, Maggiore, T (2002) Morphological and physiological characterisation of red rice [Oryza sativa L.-Lombardy]. Rivista di Agronomia (Italy) 36:157–162 Google Scholar
Busanello, C, Venske, E, Stafen, CF, Pedrolo, AM, da Luz, VK, Pedron, T, Paniz, FP, Batsta, BL, de Magalhães Júnior, AM, de Oliveira, AC, Pegoraro, C (2020) Is the genetic variability of elite rice in southern Brazil really disappearing? Crop Breed Appl Biotechnol 20:e262620214 CrossRefGoogle Scholar
Calicioglu, O, Flammini, A, Bracco, S, Bellù, L, Sims, R (2019) The future challenges of food and agriculture: an integrated analysis of trends and solutions. Sustainability 11:222 CrossRefGoogle Scholar
Chaudhari, PR, Tamrakar, N, Singh, L, Tandon, A, Sharma, D (2018) Rice nutritional and medicinal properties: a review article. J. Pharmacogn Phytochem 7:150–156 Google Scholar
Chen, E, Huang, X, Tian, Z, Wing, RA, Han, B (2019) The genomics of Oryza species provides insights into rice domestication and heterosis. Annu Rev Plant Biol 70:639–665 CrossRefGoogle ScholarPubMed
[Conab] Companhia Nacional de Abastecimento (2020) Acompanhamento da safra Brasileira—Grãos. http://www.conab.gov.br/info-agro/safras/graos/boletim-da-safra-de-graos/. Accessed: July 23, 2020Google Scholar
Concenço, G, Andres, A, Teló, GM, Martins, MB (2017) Phytosociological characterization of weeds as a function of residual herbicides applied to rice grown under sprinkler irrigation. Exp Agric 54:303–314 CrossRefGoogle Scholar
Cruz, CD (2013) GENES: a software package for analysis in experimental statistics and quantitative genetics. Acta Sci 35:271–276 Google Scholar
Dai, LP, Lu, XL, Zou, WW, Wang, CJ, Shen, L, Hu, J, Zhang, GH, Ren, DY, Chen, G, Zhang, Q, Xue, DW, Dong, GJ, Gao, ZY, Guo, LB, Zhu, L, et al. (2020) Mapping of QTLs for source and sink associated traits under elevated CO2 in rice (Oryza sativa L.). Plant Growth Regul 90:359–367 CrossRefGoogle Scholar
De Leon, TB, Karn, E, Al-Khatib, K, Espino, L, Blank, T, Andaya, CB, Andaya, VC, Brim-DeForest, W (2019) Genetic variation and possible origins of weedy rice found in California. Ecol Evol 9:5835–5848 CrossRefGoogle ScholarPubMed
Dornelles, SHB (2009) Caracterização de acessos polimórficos de arroz vermelho do Rio Grande do Sul por descritores morfológicos e microssatélites. Ph.D dissertation. Santa Maria, RS, Brazil: Universidade Federal de Santa Maria. 102 pGoogle Scholar
Fonseca, JR, Rangel, PHN, Prabhu, AS (2001) Características botânicas e agronômicas de cultivares de arroz (Oryza sativa L.). Santo Antônio de Goiás, GO: Empresa Brasileira de Pesquisa Agropecuária–Embrapa Doc 130. 41 pGoogle Scholar
[FAO] Food and Agriculture Organization of the United Nations (2020) Production Quantities of Rice, Paddy by Country. http://www.fao.org/faostat/en/#data/QC/visualize. Accessed: July 23, 2020Google Scholar
Gealy, D, Agrama, H, Jia, MH (2012) Genetic analysis of atypical U.S. red rice phenotypes: indications of prior gene flow in rice fields? Weed Sci. 60:451–461 CrossRefGoogle Scholar
Gower, JC (1971) A general coefficient of similarity and some of its properties. Biometrics 27:857–871 CrossRefGoogle Scholar
Gross, BL, Reagon, M, Hsu, S-C, Caicedo, AL, Jia, Y, Olsen, KM (2010) Seeing red: the origin of grain pigmentation in US weedy rice. Mol Ecol 19:3380–3393 CrossRefGoogle ScholarPubMed
Gross, BL, Skare, KJ, Olsen, KM (2009) Novel Phr1 mutations and the evolution of phenol reaction variation in US weedy rice (Oryza sativa). New Phytol 184:842–850 CrossRefGoogle Scholar
Gu, X-Y, Foley, ME, Horvath, DP, Anderson, JV, Feng, J, Zhang, L, Mowry, CR, Ye, H, Suttle, JC, Kadowaki, K, Chen, Z (2011) Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice. Genetics 189:1515–1524 CrossRefGoogle ScholarPubMed
Gu, X-Y, Shahryar, FK, Foley, ME (2005) Seed dormancy imposed by covering tissues interrelates to shattering and seed morphological characteristics in weedy rice. Crop Sci 45:948–955 CrossRefGoogle Scholar
Hoyos, V, Plaza, G, Caicedo, AL (2019) Characterization of the phenotypic variability in Colombian weedy rice (Oryza spp.). Weed Sci 67:441–452 CrossRefGoogle Scholar
Ikehashi, H (2009) Why are there Indica type and Japonica type in rice? History of the studies and a view for origin of two types. Rice Sci 16:1–13 CrossRefGoogle Scholar
[IRRI] International Rice Research Institute (2002) Standard Evaluation System for Rice. Manila, Philippines: International Rice Research Institute, 56 p Google Scholar
Juliano, LM, Donayre, DKM, Martin, EC (2020) Weedy rice: an expanding problem in direct-seeded rice in the Philippines. Weed Biol Manag 2020:1–11CrossRefGoogle Scholar
Li, L-F, Olsen, KM (2020) Population genomics of weedy crop relatives: insights from weedy rice. Pages 1–25 in Rajora OP, ed. Population Genomics. Cham, Switzerland: Springer NatureCrossRefGoogle Scholar
Liu, X, Sun, X, Wang, W, Ding, H, Liu, W, Li, G, Jiang, M, Zhu, C, Yao, F (2012) Fine mapping of Pa-6 gene for purple apiculus in rice. J Plant Biol 55:218–225 CrossRefGoogle Scholar
Mahalanobis, PC (1936) On the generalized distance in statistics. Proceedings National Institute of Science, India 12:49–55 Google Scholar
Mantel, N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209–220 Google Scholar
Merotto, AJ, Goulart, ICGR, Nunes, AL, Kalsing, A, Markus, C, Menezes, VG, Wander, AE (2016) Evolutionary and social consequences of introgression of nontransgenic herbicide resistance from rice to weedy rice in Brazil. Evol Appl 9:837–846 CrossRefGoogle ScholarPubMed
Moldenhauer, KAK, Gibbons, JH (2003) Rice morphology and development. Pages 103–127 in Smith, CW, Dilday, RH, eds Rice: Origin, History, Technology, and Production. Hoboken, NJ: Wiley Google Scholar
Morishima, H, Oka, H-I (1981) Phylogenetic differentiation of cultivated rice, 22 numerical evaluation of the indica-japonica differentiation. Jpn J Breed 31:402–413 CrossRefGoogle Scholar
Nam, K-H, Kim, DY, Moon, YS, Pack, IS, Jeong, S-C, Kim, HB, Kim, C-G (2020) Performance of hybrids between abiotic stress-tolerant transgenic rice and its weedy relatives under water-stressed conditions. Sci Rep 10:1–11 CrossRefGoogle ScholarPubMed
Nascimento, WF, da Silva, EF, Veasey, EA (2011) Agro-morphological characterization of upland rice accessions. Sci Agric 68:652–660 CrossRefGoogle Scholar
Noldin, JA, Chandler, JM, McCauley, GN (1999) Red rice (Oryza sativa) biology. I. Characterization of red rice ecotypes. Weed Technol 13:12–18 CrossRefGoogle Scholar
Noldin, JA, Chandler, JM, McCauley, GN (2006) Seed longevity of red rice ecotypes buried in soil. Planta Daninha 24:611–620 CrossRefGoogle Scholar
Rathore, M, Singh, R, Kumar, B, Chauhan, BS (2016) Characterization of functional trait diversity among Indian cultivated and weedy rice populations. Sci Rep 6:1–9 CrossRefGoogle ScholarPubMed
Ratnasekera, D, Perera, UIP, He, Z, Senanayake, SGJN, Wijesekara, GAW, Yang, X, Lu, B (2014) High level of variation among Sri Lankan weedy rice populations, as estimated by morphological characterization. Weed Biol Manag 14:68–75 CrossRefGoogle Scholar
Roso, AC, Merotto, AJ, Delatorre, CA, Menezes, VG (2010) Regional scale distribution of imidazolinone herbicide-resistant alleles in red rice (Oryza sativa L.) determined through SNP markers. Field Crops Res 119:175–182 CrossRefGoogle Scholar
Schwanke, AML, Noldin, JA, Andres, A, Procópio, SO, Concenço, G (2008) Caracterização de ecótipos de arroz daninho (Oryza sativa) provenientes de áreas de arroz irrigado. Planta Daninha 26:249–260 CrossRefGoogle Scholar
Shivrain, VK, Burgos, NR, Agrama, HA, Lawton-Rauh, A, Lu, B, Sales, MA, Boyett, V, Gealy, DR, Moldenhauer, KAK (2010a) Genetic diversity of weedy rice (Oryza sativa) in Arkansas, USA. Weed Res 50:289–302 Google Scholar
Shivrain, VK, Burgos, NR, Gealy, DR, Sales, MA, Smith, KL (2009a) Gene flow from weedy rice (Oryza sativa L.) to cultivated rice and fitness of hybrids. Pest Manag Sci 65:1124–1129 CrossRefGoogle Scholar
Shivrain, VK, Burgos, NR, Sales, MA, Mauromoustakos, A, Gealy, DR, Smith, KL, Black, HL, Jia, M (2009b) Factors affecting the outcrossing rate between ClearfieldTM rice and red rice (Oryza sativa). Weed Sci 57:394–403 Google Scholar
Shivrain, VK, Burgos, NR, Scott, RC, Gbur, EE Jr, Estorninos, LE Jr, McClelland, MR (2010b) Diversity of weedy red rice (Oryza sativa L.) in Arkansas, USA in relation to weed management. Crop Prot 29:721–730 CrossRefGoogle Scholar
Shrestha, S, Sharma, G, Burgos, NR, Tseng, TM (2020) Competitive ability of weedy rice: toward breeding weed-suppressive rice cultivars. J Crop Improv 34:455–469 CrossRefGoogle Scholar
Singh, D (1981) The relative importance of characters affecting genetic divergence. Indian J Genet Plant Breed 41:237–245 Google Scholar
Singh, V, Singh, S, Black, H, Boyett, V, Basu, S, Gealy, D, Gbur, E, Pereira, A, Scott, RC, Caicedo, A, Burgos, NR (2017) Introgression of ClearfieldTM rice crop traits into weedy red rice outcrosses. Field Crops Res 207:13–23 CrossRefGoogle Scholar
[SOSBAI] Sociedade Sul-Brasileira de Arroz Irrigado (2018) Arroz Irrigado: Recomendações Técnicas da Pesquisa para o Sul do Brasil. Farroupilha, RS, Brazil: SOSBAI. 205 pGoogle Scholar
Sokal, RR, Rohlf, FJ (1962) The comparison of dendrograms by objective methods. Taxon 11:30–40 CrossRefGoogle Scholar
Streck, EA, Magalhaes, AM, Aguiar, GA, Facchinello, PKH, Fagundes, PRR, Franco, DF, Nardino, M, Oliveira, AC (2018) Genetic progress in 45 years of irrigated rice breeding in southern Brazil. Crop Sci 58:1094–1105 CrossRefGoogle Scholar
Sudianto, E, Neik, T-X, Tam, SM, Chuah, T-S, Idris, AA, Olsen, KM, Song, B-K (2016) Morphology of Malaysian weedy rice (Oryza sativa): diversity, origin and implications for weed management. Weed Sci 64:501–512 CrossRefGoogle Scholar
Svizzero, S, Ray, A, Chakraborty, D (2019) Awn reduction and the domestication of Asian rice: a syndrome or crop improvement trait? Econ Bot 73:473–488 CrossRefGoogle Scholar
Sweeney, MT, Thomson, MJ, Cho, YG, Park, YJ, Williamson, SH, Bustamante, CD (2007) Global dissemination of a single mutation conferring white pericarp in rice. PLoS Genet 3:1418–1424 CrossRefGoogle ScholarPubMed
Taiz, L, Zeiger, E, ed (2013) Fisiologia vegetal. 5th ed. Porto Alegre, RS, Brazil: Artmed. 820 pGoogle Scholar
Tsago, Y, Wang, Z, Liu, J, Sunusi, M, Eshag, J, Akhter, D, Shi, C, Jin, X (2019) Morphological characteristics and gene mapping of purple apiculus formation in rice. Plant Mol Biol Rep 37:277–290 CrossRefGoogle Scholar
Tseng, TM, Shivrain, VK, Lawton-Rauh, AL, Burgos, NR (2018) Dormancy-linked population structure of weedy rice (Oryza sp.). Weed Sci 66:331–339 CrossRefGoogle Scholar
Wang, P, Zhou, G, Yu, H, Yu, S (2011) Fine mapping a major QTL for flag leaf size and yield-related traits in rice. Theor Appl Genet 123:1319–1330 CrossRefGoogle Scholar
Wang, Z, Fu, M-J, Zhu, H-G, Zhu, Y, Zhao, X-X, Lu, BR (2019) Enhanced genetic diversity of weedy rice populations associated with latitude decreases revealed by simple sequence repeat fingerprints. J Syst Evol 57:66–74 CrossRefGoogle Scholar
Xia, H-B., Wang, W, Xia, H, Zhao, W, Lu, BR (2011) Conspecific crop-weed introgression influences evolution of weedy rice (Oryza sativa f. spontanea) across a geographical range. PLoS ONE 6:e16189 CrossRefGoogle ScholarPubMed
Zhang, B, Ye, W, Ren, D, Tian, P, Peng, Y, Gao, Y, Ruan, B, Wang, L, Zhang, G, Guo, L, Qian, Q, Gao, Z (2015) Genetic analysis of flag leaf size and candidate genes determination of a major QTL for flag leaf width in rice. Rice 8:1–10 CrossRefGoogle Scholar
Ziska, LH, Gealy, DR, Burgos, NR, Caicedo, AL, Gressel, J, Lawton-Rauh, AL, Avila, LA, Theisen, G, Norsworthy, J, Ferrero, A, Vidotto, F, Johnson, DE, Ferreria, FG, Marchesan, E, Menezes, V, et al. (2015) Weedy (red) rice: an emerging constraint to global rice production. Pages 181–228 in Sparks, DL, ed. Advances in Agronomy. Volume 129. San Diego, CA: Academic Press Google Scholar
Supplementary material: File

Piveta et al. supplementary material

Tables S1-S3

Download Piveta et al. supplementary material(File)
File 38.3 KB