Hostname: page-component-8448b6f56d-xtgtn Total loading time: 0 Render date: 2024-04-23T17:30:31.641Z Has data issue: false hasContentIssue false

Genotype by environment interaction for litter size in pigs as quantified by reaction norms analysis

Published online by Cambridge University Press:  01 December 2008

P. W. Knap*
Affiliation:
PIC International Group, Ratsteich 31, 24837 Schleswig, Germany
G. Su
Affiliation:
Faculty of Agricultural Sciences, University of Aarhus, 8830 Tjele, Denmark
Get access

Abstract

A Bayesian procedure was used to estimate linear reaction norms (i.e. individual G × E plots) on 297 518 litter size records of 121 104 sows, daughters of 2040 sires, recorded on 144 farms in North and Latin America, Europe, Asia and Australia. The method allowed for simultaneous estimation of all parameters involved. The analysis was carried out on three subsets, comprising (i) parity 1 records of 33 641 sows of line B, (ii) all parity records of 52 120 sows of line B and (iii) all parity records of 121 104 sows of lines A, B and A × B. Estimated heritabilities ranged from 0.09 to 0.10 (smallest to largest subset) for the intercept of the reaction norms, and were 0.15, 0.08 and 0.02 (ditto) for the slope. Estimated genetic correlations between intercept and slope were −0.09, +0.26 and +0.69 (ditto). The three subsets therefore showed a progressively lower genetic component to environmental sensitivity, and progressively less re-ranking of genotypes across the environmental (herd–year–season) range. In a genetic evaluation that does not include reaction norms in the statistical model, part of the G × E effect remains confounded with the additive genetic effect, which may lead to errors in the estimates of the additive genetic effect; the reaction norms model removes this confounding. The intercept estimates from the largest data subset show correlations with litter size estimated breeding values (EBV) from routine genetic evaluation (without reaction norms included) of 0.78 to 0.85 for sows with one to seven litter records, and 0.75 for sires. Hence, including reaction norms in genetic evaluation would increase the reliability of the EBV of young selection candidates without own performance or progeny data by considerably more than 100 × (1/0.75−1) = 33%. Reaction norm slope estimates turn out to be very demanding statistics; environmental sensitivity must therefore be classified as a ‘hard-to-measure’ trait.

Type
Full Paper
Copyright
Copyright © The Animal Consortium 2008

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Anderson S 2004. Environmental effects on animal genetic resources. Commission on Genetic Resources for Food and Agriculture, Background Study Paper 28. FAO, Roma. Retrieved February 10, 2008, from http://ftp.fao.org/docrep/fao/010/a1250e/annexes/ThematicStudies/bsp28e.pdfGoogle Scholar
Calus, MPL, Groen, AF, De Jong, G 2002. Genotype × environment interaction for protein yield in Dutch dairy cattle as quantified by different models. Journal of Dairy Science 85, 31153123.CrossRefGoogle ScholarPubMed
Haldane, JBS 1946. The interaction of nature and nurture. Annals of Eugenetics (London) 13, 197205.Google ScholarPubMed
Hermesch S, Huisman AE, Luxford BG and Graser HU 2006. Analysis of genotype by feeding level interaction in pigs applying reaction norm models. Eigth World Conference on Genetics Applied to Livestock Production, Belo Horizonte, Brazil. Contribution 06-03. Retrieved February 12, 2008, from http://www.wcgalp8.org.br/wcgalp8/articles/paper/6_480-1986.pdfGoogle Scholar
Knap PW and Wang L 2006. Robustness in pigs and what we can learn from other species. Eigth World Conference on Genetics Applied to Livestock Production, Belo Horizonte, Brazil. Contribution 06-01. Retrieved February 12, 2008, from http://www.wcgalp8.org.br/wcgalp8/articles/paper/6_203-1825.pdf.Google Scholar
Kolmodin, R, Strandberg, E, Madsen, P, Jensen, J, Jorjani, H 2002. Genotype by environment interaction in Nordic dairy cattle studied using reaction norms. Acta Agriculturae Scandinavica Section A 52, 1124.CrossRefGoogle Scholar
Kolmodin, R, Strandberg, E, Jorjani, H, Danell, B 2003. Selection in the presence of a genotype by environment interaction: response in environmental sensitivity. Animal Science 76, 375385.CrossRefGoogle Scholar
Lynch, M, Walsh, B 1998. Genetics and analysis of quantitative traits. Sinauer, Sunderland, MA, USA.Google Scholar
Madsen, P, Jensen, J 2004. A user’s guide to DMU, version 6, release 4.5. Danish Institute of Agricultural Sciences, Tjele, Denmark.Google Scholar
Maricle, EA, Souza, JC, Campos de Silva, LO, Gondo, A, Weaber, RL, Lamberson, WR 2007. Genotype by environment interactions estimated by using reaction norms in Brazilian Nellore cattle. Journal of Animal Science 85 (Suppl. 1), 190.Google Scholar
Pollott, GE, Greeff, JC 2004. Genotype × environment interactions and genetic parameters for fecal egg count and production traits of Merino sheep. Journal of Animal Science 82, 28402851.CrossRefGoogle ScholarPubMed
Rothschild, MF, Bidanel, JP 1998. Biology and genetics of reproduction. In The genetics of the pig. (ed. MF Rothschild and A Ruvinsky), pp. 313343. CAB International, Wallingford, UK.Google Scholar
Schinckel AP, Richert BT, Frank JW and Kendall DC 1999. Genetic by environmental interactions for pig growth. Purdue University 1999 Swine Day Report. Retrieved February 12, 2008, from http://www.ansc.purdue.edu/swine/swineday/sday99/13.pdfGoogle Scholar
Strandberg E 2006. Analysis of genotype by environment interaction using random regression models. Eigth World Conference on Genetics Applied to Livestock Production, Belo Horizonte, Brazil. Contribution 25-05. Retrieved February 12, 2008, from http://www.wcgalp8.org.br/wcgalp8/articles/paper/25_756-1101.pdfGoogle Scholar
Su, G, Madsen, P, Lund, MS, Sorensen, D, Korsgaard, IR, Jensen, J 2006. Bayesian analysis of the linear reaction norm model with unknown covariates. Journal of Animal Science 84, 16511657.CrossRefGoogle ScholarPubMed
Van der Waaij, EH 2004. A resource allocation model describing consequences of artificial selection under metabolic stress. Journal of Animal Science 82, 973981.CrossRefGoogle ScholarPubMed