We present the Evolutionary Map of the Universe (EMU) survey conducted with the Australian Square Kilometre Array Pathfinder (ASKAP). EMU aims to deliver the touchstone radio atlas of the southern hemisphere. We introduce EMU and review its science drivers and key science goals, updated and tailored to the current ASKAP five-year survey plan. The development of the survey strategy and planned sky coverage is presented, along with the operational aspects of the survey and associated data analysis, together with a selection of diagnostics demonstrating the imaging quality and data characteristics. We give a general description of the value-added data pipeline and data products before concluding with a discussion of links to other surveys and projects and an outline of EMU’s legacy value.

This paper investigates the association between potential serum biomarkers and diabetes status in older Australians by employing traditional and machine learning methods. Data from Sydney Memory and Ageing Study (MAS) were interrogated cross-sectionally in 801 participants aged 70–90 years (n = 801). Twenty-eight serum biomarkers and 6 other factors were investigated as potential indicators that may distinguish diabetes status. Diabetes status was categorised as No-Diabetes, Pre-diabetes, and Type 2 diabetes (T2D). Diabetes is defined as follows when using fasting plasma glucose: no diabetes/ normal: < 5.6 mmol/L; prediabetes: 5.6–6.9 mmol/L; and diabetes: ≥ 7 mmol/L(1). Variable selection was executed using two distinct regression methods (i) multinomial logistic regression with backward selection and (ii) machine learning using elasticNet regression. Multiple imputation was used to address missing data. Age and sex were included as a priori covariates in the multinomial regression model. Using a multinomial logistic regression, Malondialdehyde (MDA), Macrophage inhibiting cytokine 1 (MIC1), and vitamin E were associated with diabetes status. MDA was strongly associated with diabetes with relative risk ratio (RRR) of 4.78 (95% CI = 3.39, 6.75; p < 0.001) when comparing to no diabetes, surpassing usual markers insulin, triglycerides, and waist-to-hip (WHR). Diabetes was associated with lower vitamin E levels, compared to no diabetes, with an RRR of 0.54 (95% CI:0.38, 0.75; p < 0.001). Comparing diabetes to prediabetes, RRR for lower vitamin E levels was 0.71 (95% CI: 0.51, 0.98; p = 0.035). MIC1 distinguished between diabetes and prediabetes status (RRR: 1.84; 95% CI:1.41, 2.41; p < 0.001). Consistent with the traditional methods, machine learning also identified MDA as being associated with T2D, with an odds ratio (OR) of 1.9, followed hierarchically by insulin (OR = 1.23), WHR (OR = 1.22) and triglyceride (OR = 1.13). Higher serum Vitamin E were associated with a lower risk of being in diabetes category (OR = 0.84). MIC1, urate, IL1b, HDL, and carotene were identified by the machine learning model, but showed minimal association. These results suggest that the oxidative stress and inflammation markers distinguish the state of having T2D.

I.B.M. tabulating equipment can be of considerable help in reducing the time and increasing the accuracy of multiple factor analysis, even if used for only a part of the calculations. Once the plugboard is wired and those cards punched which are used over and over again, problems involving any number of variables can be handled with dispatch. The correlation matrix is listed, the totals verified, and the signs changed on the tabulator. Then the factors and the residual coefficients are calculated by means of a calculator. Tucker's procedure has been modified by using a calculator instead of a multiplying punch, by reducing the number of cards used, by simplifying checks on calculations, by simplifying plugboard wiring, and by preparing work sheets on tabulator paper. Extraction of factors from 24 variables at the rate of one in four hour's time seems to justify the use of the tabulating equipment on small problems.

We present a re-discovery of G278.94+1.35a as possibly one of the largest known Galactic supernova remnants (SNRs) – that we name Diprotodon. While previously established as a Galactic SNR, Diprotodon is visible in our new Evolutionary Map of the Universe (EMU) and GaLactic and Extragalactic All-sky MWA (GLEAM) radio continuum images at an angular size of $3{{{{.\!^\circ}}}}33\times3{{{{.\!^\circ}}}}23$, much larger than previously measured. At the previously suggested distance of 2.7 kpc, this implies a diameter of 157$\times$152 pc. This size would qualify Diprotodon as the largest known SNR and pushes our estimates of SNR sizes to the upper limits. We investigate the environment in which the SNR is located and examine various scenarios that might explain such a large and relatively bright SNR appearance. We find that Diprotodon is most likely at a much closer distance of $\sim$1 kpc, implying its diameter is 58$\times$56 pc and it is in the radiative evolutionary phase. We also present a new Fermi-LAT data analysis that confirms the angular extent of the SNR in gamma rays. The origin of the high-energy emission remains somewhat puzzling, and the scenarios we explore reveal new puzzles, given this unexpected and unique observation of a seemingly evolved SNR having a hard GeV spectrum with no breaks. We explore both leptonic and hadronic scenarios, as well as the possibility that the high-energy emission arises from the leftover particle population of a historic pulsar wind nebula.

Basal channels, which are troughs carved into the undersides of ice shelves by buoyant plumes of water, are modulators of ice-shelf basal melt and structural stability. In this study, we track the evolution of 12 large basal channels beneath ice shelves of the Amundsen and Bellingshausen seas region in West Antarctica using the Landsat record since its start in the 1970s through 2020. We observe examples of channel growth, interactions with ice-shelf features, and systematic changes in sinuosity that give insight into the life cycles of basal channels. We use the last two decades of the record, combined with contemporary ice-flow velocity datasets, to separate channel-path evolution into components related to advection by ice flow and those controlled by other forcings, such as ocean melt or surface accumulation. Our results show that ice-flow-independent lateral channel migration is overwhelmingly to the left when viewed down-flow, suggesting that it is dominated by Coriolis-influenced ocean melt. By applying a model of channel-path evolution dominantly controlled by ice flow and ocean melt, we show that the majority of channels surveyed exhibit non-steady behavior that serves as a novel proxy for increased ocean forcing in West Antarctica starting at least in the early 1970s.

The thermal effects, as well as the survivability and origins of microorganisms in Cretaceous rocks, are evaluated from the timing and extent of the smectite to illite transformation in Cretaceous bentonites collected from cores outside the thermal aureole of the Pliocene Cerro Negro volcanic neck. Overall, randomly ordered mixed-layered illite-smectite (I-S) is the predominant clay mineral in these bentonites, and the K-Ar ages of I-S range from 36 to 48 Ma (21 analyses, two additional analyses were outside this range). Increased temperature from burial is thought to be the primary factor forming I-S in these bentonites. Kinetic model calculations of the smectite to illite transformation are also consistent with I-S formed by burial without any appreciable thermal effects due to the emplacement of Cerro Negro. In a core angled toward Cerro Negro, the percentages of illite layers in I-S from the bentonite closest to Cerro Negro are slightly higher (32-37%) than in most other bentonites in this study. The K-Ar ages of the closest I-S are slightly younger as a group (38-43 Ma; Average = 41 Ma; N = 4) than those of I-S further from Cerro Negro in the same core (41-48 Ma; Average = 44 Ma; N = 6). A small amount of illite in this I-S may have formed by heat from the emplacement of Cerro Negro, but most illite formed from burial. Vitrinite reflectance, however, appears to record the effects of heating from Cerro Negro better than I-S. Tentatively, the temperature of this heat pulse, based on vitrinite data alone, ranged from 100 to 125°C and this is most evident in the CNAR core. The upper temperature, 125°C, approximates the sterilization temperatures for most microorganisms, and these temperatures probably reduced a significant portion of the microbial population. Thermophiles may have survived the increased temperatures from the combined effects of burial and the intrusion of Cerro Negro.

K-Ar measurements were used in this study of upland Savannah River Site soils to distinguish between sorbed K and the K remaining in remnants of primary minerals. Study of sorbed K contributes to understanding further the interaction of alkali metals (Cs in particular) with the soils. Primary mineral K and the associated radiogenic Ar were studied to characterize soil mica with respect to its provenance and its relationship to hydroxy-interlayered vermiculite. K-Ar age values of Na-saturated clay fractions from five samples of these soils range in age from 270 to 370 Ma. After a moderate acid treatment (6% HNO3 v/v, ~1 mol dm-3, 3 h, 80°C) of the clay fractions, K-Ar age values (270-325 Ma) were little changed on the whole, but they were more closely grouped near 300 Ma. Earlier work had shown that most of the K in these soils is found in material resistant to moderate acid extraction. The K-Ar age values show that this acid-resistant material is much older than any pedogenic minerals could be, even much older than the sedimentary parent rocks from which the soils were derived. These observations support earlier inferences by others that the K in these well leached soils is largely in remnants of primary muscovite from the parent sediments. Age values near 300 Ma suggest that the muscovite is largely from proximal Piedmont terranes of the Appalachian orogen, where the K-Ar relationship in most micas was set by Alleghanian tectonic processes late in the Paleozoic Era. The structural location of the K within mica, shown by the retention of the associated radiogenic Ar, is in contrast to the sorption-dominated behavior of the Cs and most of the Rb in these soils during pedogenesis. Stronger acid treatment (~6 mol dm-3 HNO3, 3 h, 100°C) extracted substantial fractions of both the K and the radiogenic Ar from bulk-soil portions, indicating destruction of some of the primary mica. K-Ar age values for the sand-rich bulk soils were not useful for this study because the sand contains excess radiogenic Ar, probably in sand-sized vein quartz.

In what sense do Anglicans believe in baptismal regeneration? This article contends that according to historic Anglicanism, baptism effectually regenerates those who faithfully receive it. While this is a disputed claim even among Anglicans, it is consistent with the formularies of the Church of England, and it largely represents a predominant position held by Anglicans across the centuries. Article XXVII of the Thirty-Nine Articles of Religion will serve as the primary point of reference for assessing the above question. The following study is organized in three sections that respectively address: (1) the sacramental efficacy of baptism; (2) the regenerative nature of baptism; and (3) the need for faith to accompany baptism. Each section examines diverse historical expressions relevant to these doctrines in light of their scriptural basis. A brief reflection on infant baptism concludes the paper.

Some human settlements endure for millennia, while others are founded and abandoned within a few decades or centuries. The reasons for variation in the duration of site occupation, however, are rarely addressed. Here, the authors introduce a new approach for the analysis of settlement longevity or persistence. Using seven regional case studies comprising both survey and excavation data, they demonstrate how the median persistence of individual settlements varies widely within and among regions. In turn, this variability is linked to the effects of environmental potential. In seeking to identify the drivers of settlement persistence in the past, it is suggested that archaeologists can contribute to understanding of the sustainability and resilience of contemporary cities.

The common brushtail possum (Trichosurus vulpecula), introduced from Australia about 150 years ago, has become a major pest threatening the native biota of New Zealand. It is also an important disease vector, acting as a wildlife reservoir of infection. Conventional methods of control have had little effect on reducing the national population, so there is a quest to find more effective and humane methods. This has led to an upsurge in research aimed at increasing our knowledge of the biology of this marsupial, with an attendant increase in requirements for access to colony-housed animals.

Possums kept for research purposes have often been housed in individual cages, and several colonies have experienced high mortality rates. After capture, possums have shown inappetence, weight loss and a predisposition to infection, suggesting that this species is susceptible to post-capture stress. For our reproductive studies, research animals are only useful if maintained under conditions that ensure behavioural and physiological processes remain normal. We have adopted an ‘animal husbandry’ approach for our possum colony, where social interaction and the ability to exhibit instinctive behaviour patterns are considered as important as adequate nutrition and housing.

In this colony, group-housed possums show no signs of post-capture stress, and mortality rate has been less than one per cent (of > 600 animals housed to date). Virtually all possums gain weight over the first month of captivity. Procedures for monitoring, handling and the collection of data from these animals, are carried out with little apparent stress to either animals or staff.

We have found a class of circular radio objects in the Evolutionary Map of the Universe Pilot Survey, using the Australian Square Kilometre Array Pathfinder telescope. The objects appear in radio images as circular edge-brightened discs, about one arcmin diameter, that are unlike other objects previously reported in the literature. We explore several possible mechanisms that might cause these objects, but none seems to be a compelling explanation.

Between April 2008 and July 2015, we conducted a total of 18 trips on five different side-haul trawlers fishing within the Argentine Exclusive Economic Zone, monitoring 486 hauls. We observed 100% of the hauls and monitored trawl cables for 136.7 hours, about 5% of the trawl effort, to identify the levels of seabird bycatch from net entanglements and collisions with trawl cables. A total of 35 net entanglements of White-chinned Petrels Procellaria aequinoctialis, Great Shearwaters Ardenna gravis, Black-browed Albatrosses Thalassarche melanophris and Southern Royal Albatross Diomedea epomophora were recorded, all of which occurred during the autumn and winter. Additionally, 656 seabird collisions against trawl cables were recorded including 39 heavy, 96 medium and 521 light. Further, we recorded nine Black-browed Albatrosses and two Great Shearwaters potentially dead. Although in the study fishery the number of deaths in the trawl cables could surpass the number of birds incidentally killed in nets, the mortality rate caused by the latter type of interaction far exceeds those observed in nets from other trawl fisheries operating in the Patagonian Shelf. Fortunately, 26% of the seabirds entangled in the net were recovered and released alive, which indicates that awareness and training in safe bird handling and release may improve captured seabird survival rates. The main objectives of this work is to highlight a little-studied source of seabird mortality by entanglement, to generate discussion on potential technical mitigation measures for side-haul trawl fisheries, and to propose crew training in safe handling and release of seabirds as an immediate mitigation measure.

The objective of this study was to describe the epidemiology of COVID-19 in Nigeria with a view of generating evidence to enhance planning and response strategies. A national surveillance dataset between 27 February and 6 June 2020 was retrospectively analysed, with confirmatory testing for COVID-19 done by real-time polymerase chain reaction (RT-PCR). The primary outcomes were cumulative incidence (CI) and case fatality (CF). A total of 40 926 persons (67% of total 60 839) had complete records of RT-PCR test across 35 states and the Federal Capital Territory, 12 289 (30.0%) of whom were confirmed COVID-19 cases. Of those confirmed cases, 3467 (28.2%) had complete records of clinical outcome (alive or dead), 342 (9.9%) of which died. The overall CI and CF were 5.6 per 100 000 population and 2.8%, respectively. The highest proportion of COVID-19 cases and deaths were recorded in persons aged 31–40 years (25.5%) and 61–70 years (26.6%), respectively; and males accounted for a higher proportion of confirmed cases (65.8%) and deaths (79.0%). Sixty-six per cent of confirmed COVID-19 cases were asymptomatic at diagnosis. In conclusion, this paper has provided an insight into the early epidemiology of COVID-19 in Nigeria, which could be useful for contextualising public health planning.

Stationary ice-penetrating radar (sIPR) systems can be used to monitor temporal changes in electromagnetically sensitive properties of glaciers and ice sheets. We describe a system intended for autonomous operation in remote glacial environments, and document its performance during deployments in cold and temperate settings. The design is patterned after an existing impulse radar system, with the addition of a fibre-optic link and timing module to control transmitter pulses, a micro-UPS (uninterruptable power supply) to prevent uncontrolled system shutdown and a customized satellite telemetry scheme. Various implementations of the sIPR were deployed on the Kaskawulsh Glacier near an ice-marginal lake in Yukon, Canada, for 44–77 days in summers 2014, 2015 and 2017. Pronounced perturbations to englacial radiostratigraphy were observed commensurate with lake filling and drainage, and are interpreted as changes in englacial water storage. Another sIPR was deployed in 2015–2016 on ice island PII-A-1-f, which originated from the Petermann Glacier in northwest Greenland. This system operated autonomously for almost a year during which changes in thickness of the ice column were clearly detected.

Congenital heart defects (CHDs) occur in 8 of 1000 live-born children, making them common birth defects in the adolescent population. CHDs may have single gene, chromosomal, or multifactorial causes. Despite evidence that patients with CHD want information on heritability and genetics, no studies have investigated the interest or knowledge base in the adolescent population. This information is necessary as patients in adolescence take greater ownership of their health care and discuss reproductive risks with their physicians. The objectives of this survey-based study were to determine adolescents’ recall of their own heart condition, to assess patient and parent perception of the genetic contribution to the adolescent’s CHD, and to obtain information about the preferred method(s) for education. The results show that adolescent patients had good recall of their type of CHD. Less than half of adolescents and parents believed their CHD had a genetic basis or was heritable; however, adolescents with a positive family history of CHD were more likely to believe that their condition was genetic (p = 0.0005). The majority of patients were interested in receiving additional genetics education and preferred education in-person and in consultation with both parents and a physician. The adolescents who felt most competent to have discussions with their doctors regarding potential causes of their heart defect previously had a school science course which covered topics in genetics. These results provide insight into adolescents’ perceptions and understanding about their CHD and genetic risk and may inform the creation and provision of additional genetic education.

Background: SMA1 is a neurodegenerative disease caused by bi-allelic survival motor neuron 1 gene (SMN1) deletion/mutation. In the phase 1 study, SMN GRT onasemnogene abeparvovec (AVXS-101) improved outcomes of symptomatic SMA1 patients. We report preliminary data of STR1VE, a pivotal study (NCT03306277) evaluating efficacy and safety of a one-time intravenous AVXS-101 infusion. Methods: STR1VE is a phase 3, multicenter, open-label, single-arm study in SMA1 patients aged <6 months (bi-allelic SMN1 loss, 2xSMN2). Primary outcomes: independent sitting for ≥30 seconds (18 months) and survival (14 months). Secondary outcomes: ability to thrive and ventilatory support (18 months). Exploratory outcomes: CHOP-INTEND and Bayley Scales of Infant and Toddler Development scores. Results: Enrollment is complete with 22 patients dosed. Mean age at symptom onset, genetic diagnosis, and enrollment was 1.9 (0–4.0), 2.1 (0.5–4.0), and 3.7 (0.5–5.9) months. At baseline, no patient required ventilatory/nutritional support, and all exclusively fed by mouth. Mean baseline CHOP-INTEND score was 32.6 (17.0–52.0), which increased 6.9 (-4.0–16.0, n=20), 10.4 (2.0–18.0, n=12), and 11.6 (-3.0–23.0, n=9) points at 1, 2, and 3 months; updates provided at congress. Conclusions: Preliminary data from STR1VE show rapid motor function improvements in SMA1 patients, paralleling phase 1 findings.

Edamame [Glycine max (L.) Merr.] differs from grain-type soybean in several aspects, one being that edamame seeds are 65% to 100% larger than grain-type soybean seed. Crop seed size has implications for weed management in grain-type soybean; however, the extent to which this observation holds true for edamame is unknown. Because weed interference continues to be a barrier to domestic edamame production, the objective was to quantify the effect of edamame seed size on the crop’s ability to tolerate weed interference (CT) and the crop’s ability to suppress weeds (WSA). Five edamame cultivars plus one grain-type cultivar were each sorted to create “small” and “large” seed size classes. Seed lots were included in a split–split plot design, whereby an additional experimental factor was presence or absence of velvetleaf (Abutilon theophrasti Medik.). Crop and weed emergence and growth were monitored through 8 wk after emergence (WAE). Crop plants from large seed had higher tolerance to A. theophrasti than plants from small seed, as evidenced by crop height, area, and biomass. Edamame seed size had little effect on WSA; however, crop cultivars differentially reduced A. theophrasti leaf area and biomass at 4 and 8 WAE. While both seed size and edamame cultivar influence early-season crop competitive ability, the magnitude of these factors on CT and WSA underscores the importance of considering them not as stand-alone tactics but rather as useful additions to a more comprehensive integrated weed management system.