The signal recognition particle (SRP) is a phylogenetically conserved ribonucleoprotein required for cotranslational targeting of proteins to the membrane of the endoplasmic reticulum of the bacterial plasma membrane. Domain IV of SRP RNA consists of a short stem-loop structure with two internal loops that contain the most conserved nucleotides of the molecule. All known essential interactions of SRP occur in that moiety containing domain IV. The solution structure of a 43-nt RNA comprising the complete Escherichia coli domain IV was determined by multidimensional NMR and restrained molecular dynamics refinement. Our data confirm the previously determined rigid structure of a smaller subfragment containing the most conserved, symmetric internal loop A (Schmitz et al., Nat Struct Biol, 1999, 6:634–638), where all conserved nucleotides are involved in nucleotide-specific structural interactions. Asymmetric internal loop B provides a hinge in the RNA molecule; it is partially flexible, yet also uniquely structured. The longer strand of internal loop B extends the major groove by creating a ledge-like arrangement; for loop B however, there is no obvious structural role for the conserved nucleotides. The structure of domain IV suggests that loop A is the initial site for the RNA/protein interaction creating specificity, whereas loop B provides a secondary interaction site.

Reactively-sputtered, polycrystalline thin film aluminum nitride (AlN) is an attractive material for use in acoustic wave devices, for which it requires a strong preferred orientation, similar to that found in epitaxial films. This investigation evaluated the grain structure including preferred orientation, grain size, and surface morphology of sputtered A1N films. The characterization techniques utilized included x-ray diffraction (XRD), secondary ion mass spectroscopy (SIMS), transmission electron microscopy (TEM), and atomic force microscopy (AFM). The results revealed two types of grain structure: 1) a single-grain columnar structure that is perfectly oriented in the [001] direction throughout the entire film thickness and 2) a multiple-grain columnar structure that possesses a strong [001] orientation at the bottom of the film and a tilted [001] combined with other orientations at the top of the film. Strong correlations between orientation and surface morphology, oxygen content, and grain size were observed, namely higher degrees of c-axis orientation correlated with lower mean surface roughness values, reduced oxygen concentration, and narrower grains.