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Major depressive disorder (MDD) is the leading cause of disability globally, with moderate heritability and well-established socio-environmental risk factors. Genetic studies have been mostly restricted to European settings, with polygenic scores (PGS) demonstrating low portability across diverse global populations.
Methods
This study examines genetic architecture, polygenic prediction, and socio-environmental correlates of MDD in a family-based sample of 10 032 individuals from Nepal with array genotyping data. We used genome-based restricted maximum likelihood to estimate heritability, applied S-LDXR to estimate the cross-ancestry genetic correlation between Nepalese and European samples, and modeled PGS trained on a GWAS meta-analysis of European and East Asian ancestry samples.
Results
We estimated the narrow-sense heritability of lifetime MDD in Nepal to be 0.26 (95% CI 0.18–0.34, p = 8.5 × 10−6). Our analysis was underpowered to estimate the cross-ancestry genetic correlation (rg = 0.26, 95% CI −0.29 to 0.81). MDD risk was associated with higher age (beta = 0.071, 95% CI 0.06–0.08), female sex (beta = 0.160, 95% CI 0.15–0.17), and childhood exposure to potentially traumatic events (beta = 0.050, 95% CI 0.03–0.07), while neither the depression PGS (beta = 0.004, 95% CI −0.004 to 0.01) or its interaction with childhood trauma (beta = 0.007, 95% CI −0.01 to 0.03) were strongly associated with MDD.
Conclusions
Estimates of lifetime MDD heritability in this Nepalese sample were similar to previous European ancestry samples, but PGS trained on European data did not predict MDD in this sample. This may be due to differences in ancestry-linked causal variants, differences in depression phenotyping between the training and target data, or setting-specific environmental factors that modulate genetic effects. Additional research among under-represented global populations will ensure equitable translation of genomic findings.
Splashing of impacting drops produces a myriad of secondary spray droplets, which generate aerosols during rain on the ocean and can cause health hazards during the spraying of pesticides or enhance the droplet transmission of disease. Determining the size and number of the finest splashed droplets is therefore of practical interest. Herein, we use a novel experimental facility with a 26 m tall vacuum tube, to study well-controlled drop impacts at velocities as high as 22 m s$^{-1}$, where we reach parameter regimes not studied before using freely falling drops. Using extreme video frame rates, we pinpoint the primary source of the finest spray, coming from the catastrophic bending and rupture of the sub-micron-thick ejecta sheet, which emerges at a high speed from the neck connecting the drop and pool. The axisymmetric bending and convoluted ejecta shapes are driven primarily by resistance from the surrounding air, but also depend on the viscosity difference between drop and pool, which influences the initial ejection angle of the sheet. These extreme impact conditions provide new insights into general spray formation, through a sequence of bucklings of the rising ejecta, which dances next to the drop surface and can also form an enclosed air torus.
Granular temporal and spatial scale observations of conservation practices are essential for identifying changes in the production systems that improve soil health and water quality and inform long-term agricultural research and adaptive policy development. In this study, we demonstrate an innovative use of farmer practice survey data and what can be uniquely known from a detailed survey that targets specific farm groups with a regional focus over multiple consecutive years. Using three years of survey data (n = 3914 respondents), we describe prevailing crop rotation, tillage, and cover crop practice use in four Midwestern US states. Like national metrics, the results confirm dominant practices across the landscape, including corn-soybean rotation, little use of continuous no-till, and the limited use of cover crops. Our detailed regional survey further reveals differences by state for no-till and cover crop adoption rates that were not captured in federal datasets. For example, 66% of sampled acreage in the Midwest has corn and soybean rotation, with Illinois having the highest rate (72%) and Michigan the lowest (41%). In 2018, 20% of the corn acreage and 38% of the soybean acreage were in no-till, and 13% of the corn acres and 9% of the soybean acres were planted with a cover crop. Cover crop adoption rates fluctuate from year to year. Results demonstrate the value of a farmer survey at state scales over multiple years in complementing federal statistics and monitoring state and yearly differences in practice adoption. Agricultural policies and industry heavily depend on accurate and timely information that reflects spatial and temporal dynamics. We recommend building an agricultural information exchange and workforce that integrates diverse data sources with complementary strengths to provide a greater understanding of agricultural management practices that provide baseline data for prevailing practices.
Although the well-known Upper Jurassic Morrison Formation has yielded abundant fossil plants for nearly a century, relatively little is known about fossil fungi and their ecological relationships to the Morrison flora. The first mention of fungal decay in fossil wood was briefly made over three decades ago, and since then, a few more reports of fungal decay associated with Morrison plants have been published. However, up to now, detailed data on the fossil fungi themselves have not been given from the Morrison Formation. Here we describe in detail well-preserved fossil mycelia in a silicified log of Xenoxylon utahense Xie et Gee, 2021 from the Upper Jurassic Morrison Formation at Miners Draw, Blue Mountain, near Vernal in northeastern Utah, USA. The fungal hyphae are variable in form, ranging from straight to slightly curved to highly coiled to tubular; they measure ~1.53 μm in diameter and possess clamp connections, septa, and occasional bifurcations. The occurrence of clamp connections typical of living Basidiomycota indicates a taxonomic affinity to this division of fungi. On the basis of the patterns of wood decay in the Xenoxylon log, the fossil fungi are interpreted here as pertaining to saprotrophic, white-rot wood fungi. These fossil mycelia represent a new record of ancient Basidiomycota from the Upper Jurassic Morrison Formation and provide further evidence for plant–fungus interactions in Jurassic terrestrial ecosystems.
Fast microjets can emerge out of liquid pools from the rebounding of drop-impact craters, or when a bubble bursts at its surface. The fastest jets are the narrowest and are a source of aerosols both from the ocean and from a glass of champagne, of importance to climate and the olfactory senses. The most singular jets, which we observe experimentally at a maximum velocity of $137\pm 4\ {\rm m}\ {\rm s}^{-1}$ and a diameter of $12\ \mathrm {\mu }{\rm m}$, under reduced ambient pressure, are produced when a small dimple forms at the crater bottom and rebounds without pinching off a small bubble. The radial collapse and rebounding of this dimple is purely inertial, but highly sensitive to initial conditions. High-resolution numerical simulations reveal a new focusing mechanism, which drives the fastest jet within a converging conical channel, where an entrained air sheet provides effective slip at the outer boundary of the conically converging flow into the jet. This configuration bypasses any viscous cutoff of the jetting speed and explains the extreme sensitivity to initial conditions observed in detailed experiments of the phenomenon.
Over recent decades, Chinese giant salamanders Andrias spp. have declined dramatically across much of their range. Overexploitation and habitat degradation have been widely cited as the cause of these declines. To investigate the relative contribution of each of these factors in driving the declines, we carried out standardized ecological and questionnaire surveys at 98 sites across the range of giant salamanders in China. We did not find any statistically significant differences between water parameters (temperature, dissolved oxygen, ammonia, nitrite, nitrate, salinity, alkalinity, hardness and flow rate) recorded at sites where giant salamanders were detected by survey teams and/or had been recently seen by local respondents, and sites where they were not detected and/or from which they had recently been extirpated. Additionally, we found direct and indirect evidence that the extraction of giant salamanders from the wild is ongoing, including within protected areas. Our results support the hypothesis that the decline of giant salamanders across China has been primarily driven by overexploitation. Data on water parameters may be informative for the establishment of conservation breeding programmes, an initiative recommended for the conservation of these species.
We study the evolution of unidirectional water waves from a randomly forced input condition with uncorrelated Fourier components. We examine the kurtosis of the linearised free surface as a convenient proxy for the probability of a rogue wave. We repeat the laboratory experiments of Onorato et al. (Phys. Rev. E, vol. 70, 2004, 067302), both experimentally and numerically, and extend the parameter space in our numerical simulations. We consider numerical simulations based on the modified nonlinear Schrödinger equation and the fully nonlinear water wave equations, which are in good agreement. For low steepness, existing analytical models based on the nonlinear Schrödinger equation (NLS) are found to be accurate. For cases which are steep or have very narrow bandwidths, these analytical models over-predict the rate at which excess kurtosis develops. In these steep cases, the kurtosis in both our experiments and numerical simulations peaks before returning to an equilibrium level. Such transient maxima are not predicted by NLS-based analytical models. Above a certain threshold of steepness, the steady-state value of kurtosis is primarily dependent on the spectral bandwidth. We also examine how the average shape of extreme events is modified by nonlinearity over the evolution distance, showing significant asymmetry during the initial evolution, which is greatly reduced once the spectrum has reached equilibrium. The locations of the maxima in asymmetry coincide approximately with the locations of the maxima in kurtosis.
We study singular jets from the collapse of drop-impact craters, when the drop and pool are of different immiscible liquids. The fastest jets emerge from a dimple at the bottom of the rebounding crater, when no bubble is pinched off. The parameter space is considerably more complex than for identical liquids, revealing intricate compound-dimple shapes. In contrast to the universal capillary–inertial drop pinch-off regime, where the neck radius scales as $R\sim t^{2/3}$, for a purely inertial air dimple the collapse has $R \sim t^{1/2}$. The bottom dimple dynamics is not self-similar but possesses memory effects, being sensitive to initial and boundary conditions. Sequence of capillary waves can therefore mould the air dimple into different collapse shapes, such as bamboo-like and telescopic forms. The finest jets are only $12\ \mathrm {\mu }\textrm {m}$ in diameter and the normalized jetting speeds are up to one order of magnitude larger than for jets from bursting bubbles. We study the cross-over between the two power laws approaching the singularity. The singular jets show the earliest cross-over into the inertial regime. The fastest jets can pinch off a toroidal micro-bubble from the cusp at the base of the jet.
Behavioural activation (BA) is an evidence-based treatment for depression that has been primarily delivered in individual out-patient treatment. Prior research supports a positive participant experience in individual therapy; however, less is known about the patient experience in group therapy, which is common in acute psychiatric settings.
Aims:
The present study examined the patient experience of Brief Behavioral Activation Treatment for Depression (BATD) delivered in group acute psychiatric treatment.
Method:
We used thematic analysis to extract themes from feedback surveys administered as part of quality improvement practice at a partial hospital program. Survey questions explored what patients learned, liked, disliked and thought could be improved in the BATD groups. Three individuals independently coded survey responses and collaboratively developed categories and themes.
Results:
Themes included several helpful content areas (e.g. value-driven activities, increasing motivation, goal setting, activity scheduling, cognitive behavioural model, self-monitoring) and learning methods (e.g. group format, experiential exercises, worksheets). Patients also identified unhelpful content (e.g. specific focus on depression and listing activities by mood). There was mixed feedback regarding the repetition of material and balance of lecture versus group participation.
Conclusion:
Overall, these findings suggest a mostly positive patient experience of group-delivered BATD and support the acceptability of group-delivered BATD as a component of short-term intensive treatment.
Beef cattle are often fed high-concentrate diet (HCD) to achieve high growth rate. However, HCD feeding is strongly associated with metabolic disorders. Mild acid treatment of grains in HCD with 1% hydrochloric acid (HA) followed by neutralization with sodium bicarbonate (SB) might modify rumen fermentation patterns and microbiota, thereby decreasing the negative effects of HCD. This study was thus aimed to investigate the effects of treatment of corn with 1% HA and subsequent neutralization with SB on rumen fermentation and microbiota, inflammatory response and growth performance in beef cattle fed HCD. Eighteen beef cattle were randomly allocated to three groups and each group was fed different diets: low-concentrate diet (LCD) (concentrate : forage = 40 : 60), HCD (concentrate : forage = 60 : 40) or HCD based on treated corn (HCDT) with the same concentrate to forage ratio as the HCD. The corn in the HCDT was steeped in 1% HA (wt/wt) for 48 h and neutralized with SB after HA treatment. The animal trial lasted for 42 days with an adaptation period of 7 days. At the end of the trial, rumen fluid samples were collected for measuring ruminal pH values, short-chain fatty acids, endotoxin (or lipopolysaccharide, LPS) and bacterial microbiota. Plasma samples were collected at the end of the trial to determine the concentrations of plasma LPS, proinflammatory cytokines and acute phase proteins (APPs). The results showed that compared with the LCD, feeding the HCD had better growth performance due to a shift in the ruminal fermentation pattern from acetate towards propionate, butyrate and valerate. However, the HCD decreased ruminal pH and increased ruminal LPS release and the concentrations of plasma proinflammatory cytokines and APPs. Furthermore, feeding the HCD reduced bacterial richness and diversity in the rumen. Treatment of corn increased resistant starch (RS) content. Compared with the HCD, feeding the HCDT reduced ruminal LPS and improved ruminal bacterial microbiota, resulting in decreased inflammation and improved growth performance. In conclusion, although the HCD had better growth performance than the LCD, feeding the HCD promoted the pH reduction and the LPS release in the rumen, disturbed the ruminal bacterial stability and increased inflammatory response. Treatment of corn with HA in combination with subsequent SB neutralization increased the RS content and helped counter the negative effects of feeding HCD to beef steers.
The Murchison Widefield Array (MWA) is an open access telescope dedicated to studying the low-frequency (80–300 MHz) southern sky. Since beginning operations in mid-2013, the MWA has opened a new observational window in the southern hemisphere enabling many science areas. The driving science objectives of the original design were to observe 21 cm radiation from the Epoch of Reionisation (EoR), explore the radio time domain, perform Galactic and extragalactic surveys, and monitor solar, heliospheric, and ionospheric phenomena. All together
$60+$
programs recorded 20 000 h producing 146 papers to date. In 2016, the telescope underwent a major upgrade resulting in alternating compact and extended configurations. Other upgrades, including digital back-ends and a rapid-response triggering system, have been developed since the original array was commissioned. In this paper, we review the major results from the prior operation of the MWA and then discuss the new science paths enabled by the improved capabilities. We group these science opportunities by the four original science themes but also include ideas for directions outside these categories.
The bird cherry-oat aphid Rhopalosiphum padi (L.) is one of the most important wheat pests with polyphagia and autumn migrants. And, chemosensory genes were thought to play a key role in insect searching their hosts, food and mate. However, a systematic identification of the chemosensory genes in this pest has not been reported. Thus, in this study, we identified 14 odorant-binding proteins, nine chemosensory proteins, one sensory neuron membrane protein, 15 odorant receptors, 19 gustatory receptors and 16 ionotropic receptors from R. padi transcriptomes with a significantly similarity (E-value < 10−5) to known chemosensory genes in Acyrthosiphon pisum and Aphis gossypii. In addition, real-time quantitative polymerase chain reaction (RT-qPCR) was employed to determine the expression profiles of obtained genes. Among these obtained genes, we selected 23 chemosensory genes to analyze their expression patterns in different tissues, wing morphs and host plants. We found that except RpOBP1, RpOBP3, RpOBP4 and RpOBP5, the rest of the selected genes were highly expressed in the head with antennae compared with body without head and antennae. Besides that, the stimulation and depression of chemosensory genes by plant switch indicated that chemosensory genes might be involved in the plant suitability assessment. These results not only provide insights for the potential roles of chemosensory genes in plant search and perception of R. padi but also provide initial background information for the further research on the molecular mechanism of the polyphagia and autumn migrants of it. Furthermore, these chemosensory genes are also the candidate targets for pest management control in future.
Violators of cooperation norms may be informally punished by their peers. How such norm enforcement is judged by others can be regarded as a meta-norm (i.e., a second-order norm). We examined whether meta-norms about peer punishment vary across cultures by having students in eight countries judge animations in which an agent who over-harvested a common resource was punished either by a single peer or by the entire peer group. Whether the punishment was retributive or restorative varied between two studies, and findings were largely consistent across these two types of punishment. Across all countries, punishment was judged as more appropriate when implemented by the entire peer group than by an individual. Differences between countries were revealed in judgments of punishers vs. non-punishers. Specifically, appraisals of punishers were relatively negative in three Western countries and Japan, and more neutral in Pakistan, UAE, Russia, and China, consistent with the influence of individualism, power distance, and/or indulgence. Our studies constitute a first step in mapping how meta-norms vary around the globe, demonstrating both cultural universals and cultural differences.
A higher-order function may evolve phylogenetically if it is demanded by multiple domain-specific modules. Task-specificity to solve a unique adaptive problem (e.g., foraging or mating) should be distinguished from function-specificity to deal with a common computational demand (e.g., numeracy, verbal communication) required by many tasks. A localized brain function is likely a result of such common computational demand.
The Soil Moisture and Ocean Salinity (SMOS) satellite’s L-band (1.4 GHz) measurements have been used to retrieve Snow thickness over thick sea Ice in a previous study. Here we consider brightness temperature simulations for 2.5–4.5m thick Arctic multi-year Ice and compare the results of the relatively simple emission model (M2013) used previously for the retrieval with simulations from a more complex model (T2011) that combines a sea-Ice version of the Microwave Emission Model for Layered Snowpacks (MEMLS) with a thermodynamic model. We find that L-band brightness temperature is mainly determined by Ice temperature. In the M2013 model, Ice temperature in turn is mainly determined by surface temperature and Snow thickness, and this dependence has been used previously to explain the potential for a Snow thickness retrieval. Our comparisons suggest that the M2013 retrieval model may benefit from a more sophisticated thermodynamic calculation of the Ice temperature or from using independent temperature data (e.g. from 6 GHz channels). In both models, horizontally polarized brightness temperatures increase with Snow thickness while holding surface temperature, Ice thickness and Snow density near constant. The increase in the T2011 model is steeper than in M2013, suggesting a higher sensitivity to Snow thickness than found earlier.
In this paper, we experimentally study the unique surface sensing property and enhanced sensitivity in subwavelength grating (SWG) based microring resonator biosensors versus conventional ring resonator biosensors. In contrast to a conventional ring, the effective sensing region in the SWG microring resonator includes not only the top and side of the waveguide, but also the space between the silicon pillars on the propagation path of the optical mode. It leads to an unique property of thickness-independent surface sensitivity versus common evanescent wave sensors; in other words, the surface sensitivity remains constantly high with progressive attachment of biomolecules to the sensor surface. To increase the robustness of performance of ring shaped circular SWG biosensors, we experimentally demonstrate silicon SWG racetrack resonators. A quality factor of 9800 and bulk sensitivity (S) is ∼429.7 nm/RIU (refractive index per unit) results in an intrinsic detection limit (iDL) 3.71×10-4 RIU in racetrack SWG biosensors while still retaining the accumulated surface thickness properties of circular rings.
While Liriomyza sativae (Diptera: Agromyzidae), an important invasive pest of ornamentals and vegetables has been found in China for the past two decades, few studies have focused on its genetics or route of invasive. In this study, we collected 288 L. sativae individuals across 12 provinces to explore its population genetic structure and migration patterns in China using seven microsatellites. We found relatively low levels of genetic diversity but moderate population genetic structure (0.05 < FST < 0.15) in L. sativae from China. All populations deviated significantly from the Hardy–Weinberg equilibrium due to heterozygote deficiency. Molecular variance analysis revealed that more than 89% of variation was among samples within populations. A UPGMA dendrogram revealed that SH and GXNN populations formed one cluster separate from the other populations, which is in accordance with STRUCTURE and GENELAND analyses. A Mantel test indicated that genetic distance was not correlated to geographic distance (r = −0.0814, P = 0.7610), coupled with high levels of gene flow (M = 40.1–817.7), suggesting a possible anthropogenic influence on the spread of L. sativae in China and on the effect of hosts. The trend of asymmetrical gene flow was from southern to northern populations in general and did not exhibit a Bridgehead effect during the course of invasion, as can be seen by the low genetic diversity of southern populations.