Religious extremism among students in major campuses in Indonesia remains a problem for the Indonesian government, campus authorities and moderate Muslims. A substantial number of studies on Islam and religious extremism in Indonesia have focused on security and cultural paradigms. In contrast, this article discusses the factors that cause the rise of religious extremism among university students through an organizational and institutional lens. The dissemination and internalization of religious extremist narratives contribute to the rise of religious extremism among university students in Indonesia. Counter-extremism policies by the government and campus authorities have not been effective due to the absence of an integrative approach. All stakeholders - the government, campus authorities, parents of university students, communities and student organizations - need to establish a concerted and integrative effort to uproot religious extremism from among university students.