16 results
Scipion3: A workflow engine for cryo-electron microscopy image processing and structural biology
- Pablo Conesa, Yunior C. Fonseca, Jorge Jiménez de la Morena, Grigory Sharov, Jose Miguel de la Rosa-Trevín, Ana Cuervo, Alberto García Mena, Borja Rodríguez de Francisco, Daniel del Hoyo, David Herreros, Daniel Marchan, David Strelak, Estrella Fernández-Giménez, Erney Ramírez-Aportela, Federico Pedro de Isidro-Gómez, Irene Sánchez, James Krieger, José Luis Vilas, Laura del Cano, Marcos Gragera, Mikel Iceta, Marta Martínez, Patricia Losana, Roberto Melero, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
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- Journal:
- Biological Imaging / Volume 3 / 2023
- Published online by Cambridge University Press:
- 29 June 2023, e13
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Image-processing pipelines require the design of complex workflows combining many different steps that bring the raw acquired data to a final result with biological meaning. In the image-processing domain of cryo-electron microscopy single-particle analysis (cryo-EM SPA), hundreds of steps must be performed to obtain the three-dimensional structure of a biological macromolecule by integrating data spread over thousands of micrographs containing millions of copies of allegedly the same macromolecule. The execution of such complicated workflows demands a specific tool to keep track of all these steps performed. Additionally, due to the extremely low signal-to-noise ratio (SNR), the estimation of any image parameter is heavily affected by noise resulting in a significant fraction of incorrect estimates. Although low SNR and processing millions of images by hundreds of sequential steps requiring substantial computational resources are specific to cryo-EM, these characteristics may be shared by other biological imaging domains. Here, we present Scipion, a Python generic open-source workflow engine specifically adapted for image processing. Its main characteristics are: (a) interoperability, (b) smart object model, (c) gluing operations, (d) comparison operations, (e) wide set of domain-specific operations, (f) execution in streaming, (g) smooth integration in high-performance computing environments, (h) execution with and without graphical capabilities, (i) flexible visualization, (j) user authentication and private access to private data, (k) scripting capabilities, (l) high performance, (m) traceability, (n) reproducibility, (o) self-reporting, (p) reusability, (q) extensibility, (r) software updates, and (s) non-restrictive software licensing.
Internal reference genes with the potential for normalizing quantitative PCR results for oral fluid specimens
- Ting-Yu Cheng, Jeffrey J. Zimmerman, Luis G. Giménez-Lirola
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- Journal:
- Animal Health Research Reviews / Volume 23 / Issue 2 / December 2022
- Published online by Cambridge University Press:
- 04 November 2022, pp. 147-156
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In basic research, testing of oral fluid specimens by real-time quantitative polymerase chain reaction (qPCR) has been used to evaluate changes in gene expression levels following experimental treatments. In diagnostic medicine, qPCR has been used to detect DNA/RNA transcripts indicative of bacterial or viral infections. Normalization of qPCR using endogenous and exogenous reference genes is a well-established strategy for ensuring result comparability by controlling sample-to-sample variation introduced during sampling, storage, and qPCR testing. In this review, the majority of recent publications in human (n = 136) and veterinary (n = 179) medicine did not describe the use of internal reference genes in qPCRs for oral fluid specimens (52.9% animal studies; 57.0% human studies). However, the use of endogenous reference genes has not been fully explored or validated for oral fluid specimens. The lack of valid internal reference genes inherent to the oral fluid matrix will continue to hamper the reliability, reproducibility, and generalizability of oral fluid qPCR assays until this issue is addressed.
Geomorphological, chronological, and paleoenvironmental context of the Mousterian site at Roca San Miguel (Arén, Huesca, Spain) from the penultimate to the last glacial cycle
- José Luis Peña-Monné, Lourdes Montes Ramírez, María Marta Sampietro-Vattuone, Rafael Domingo Martínez, Alicia Medialdea, Miguel Bartolomé, Virginia Rubio Fernández, Rosario García Giménez, Valentí Turú, Xavier Ros, Pere Baró, Juan Luis Bernal-Wormull, R. Lawrence Edwards
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- Journal:
- Quaternary Research / Volume 106 / March 2022
- Published online by Cambridge University Press:
- 15 November 2021, pp. 162-181
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The Roca San Miguel (RSM) archaeological site was occupied during Mousterian times. Here we present a geoarchaeological and paleoenvironmental reconstruction of the site. Five stratigraphic units (A to E) formed by different archaeological levels are identified. Three optically stimulated luminescence (OSL) ages show that Unit A dates to between 169.6 ± 9.1 and 151.9 ± 11.1 ka, during the penultimate glacial period (PGP), and contains numerous signs of recurring hearths. Unit B is unexcavated. Unit C dates to between 118.9 ± 11.5 and 103.4 ± 6.9 ka (late Eemian–marine isotope stage (MIS) 5d) and shows an abundance of lithic remains as well as some faunal elements. Unit C is covered by Unit D, which incorporates materials moved downslope, and is dated at 81.2 ± 4.7 ka. These OSL ages concur with U/Th ages (129.3 ± 1.5 and 123.6 ± 0.6 ka) derived from a flowstone covered by both -C and D- post-flowstone units. Finally, Unit E covers the archaeological site, which was partially eroded during MIS2. The robust and well-constrained chronology of the RSM site and surroundings enables the establishment of its evolutionary model from the PGP to the last glacial cycle. The RSM site is the oldest Neanderthal occupation accurately dated in the Pre-Pyrenean region.
Immediate effects of the implementation of nutritional warnings in Uruguay: awareness, self-reported use and increased understanding
- Gastón Ares, Lucía Antúnez, María Rosa Curutchet, Luis Galicia, Ximena Moratorio, Ana Giménez, Isabel Bove
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- Journal:
- Public Health Nutrition / Volume 24 / Issue 2 / February 2021
- Published online by Cambridge University Press:
- 12 August 2020, pp. 364-375
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Objective:
To assess the effects of nutritional warnings during the first month after the date of full compliance by the food industry in Uruguay in terms of citizen awareness, self-reported use and ability to understand nutritional information.
Design:The present work encompassed two online studies, conducted before (Study 1) and during the first month after the date of full compliance by the food industry (Study 2). An after-only design was used to assess awareness of the policy, exposure to nutritional warnings on food packages and self-reported use of warnings for making purchase decisions in Study 2. An after-only with control group experimental design was used to assess the effect of nutritional warnings on understanding of nutrition information in Studies 1 and 2.
Setting:Uruguay, one of the Latin American countries, that has recently implemented nutritional warnings.
Participants:A non-probabilistic sample of 1772 participants was recruited using Facebook advertisements targeted at Uruguayan adult users.
Results:High awareness and self-reported use of nutritional warnings during the first month after the date of full compliance in Uruguay were observed. In addition, the before and after comparison showed that the implementation of warnings increased citizens’ ability to use nutritional information to compare products and to identify products with excessive content of sugar, fat, saturated fat and sodium.
Conclusions:The current study confirms results from experimental studies and provides additional evidence to support the implementation of nutritional warnings as one of the public policies that can contribute to tackle obesity and non-communicable diseases.
Breakfast characteristics and its association with daily micronutrients intake – A systematic review and meta-analysis
- Natalia Giménez-Legarre, María Luisa Miguel-Berges, Paloma Flores-Barrantes, Alba María Santaliestra-Pasías, Luis A Moreno
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- Journal:
- Proceedings of the Nutrition Society / Volume 79 / Issue OCE2 / 2020
- Published online by Cambridge University Press:
- 10 June 2020, E450
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Introduction
Breakfast (BF) is widely recognized as an important component of a healthy lifestyle and represents an important source of key nutrients in the diet for both adults and children. Furthermore, BF consumption seems to be associated with a better intake of vitamins and minerals in both, children and adolescents.
The aim of this study was to investigate the associations between frequency and characteristics of BF consumption and its relation with micronutrients intake.
Material and MethodsAn exhaustive search was carried out in three datasets in March 2019. The search strategy used to identify the articles was as follow: breakfast, food beverages appetite regulation, child nutritional physiological phenomena, diet, digestion, eating, feeding behavior, gastrointestinal absorption, hunger, nutritional requirements, nutritional status, nutritive value, breakfast skipping, meal skipping, fasting, food preferences, diet therapy, child, preschool, adolescent, breakfast skipping and meal skipping. Two independent reviewers performed the data extraction and assessed their quality and risk of bias following the PRISMA methodology and using the Cochrane risk of bias tool. Meta-analysis was performed comparing results based on type of BF: skip BF, Ready To Eat Cereal (RTEC) BF and other types of BF. DerSimonian and Laird estimators using random effects models were applied for continuous data. Effect sizes were calculated for each outcome.
ResultsOut of 3105 articles, we selected 30 full-text articles for inclusion and 7 were considered for meta-analysis.. Children who usually skip BF had significantly lower daily intake of vitamin A (SMD, -10.407; 95%CI: -14.147, -6.667) and vitamin C (SMD, -4.127; 95%CI: -5.091, -3.162) than BF consumers. The intake of vitamin B1 (SMD, -16.378; 95%CI: -29.110, -3.647) and vitamin B2 [SMD, -14.757; 95%CI: -20.247, -9.268] was lower in skippers than RTEC BF consumers.
Regarding to minerals, children who usually consume BF had significantly higher daily consumption of Calcium (SMD, -7.034; 95%CI: -9.029, -5.040), Iron (SMD, -6.552; 95%CI: -9.242, -3.861) and Sodium (SMD, -3.395; 95%CI: -5.554, -1.236) than BF skippers. The intake of Magnesium (SMD, -10.903; 95%CI: -18.078, -3.729) and Potassium (SMD, -6.972; 95%CI: -10.689, -3.254) was higher in RTEC BF consumers than BF skippers.
DiscussionEvidence suggested that BF consumption and RTEC breakfast consumption seems to be associated with better micronutrient intake
Trophic niche separation in sympatric rocky shore crabs
- Zainab Al-Wazzan, Luis Giménez, Manaf Behbehani, Lewis Le Vay
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- Journal of the Marine Biological Association of the United Kingdom / Volume 99 / Issue 5 / August 2019
- Published online by Cambridge University Press:
- 28 March 2019, pp. 1171-1180
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Where two species occupy the same habitat and similar niches, competition is likely to drive small-scale spatial niche separation or resource partitioning that may not be immediately apparent. A stable isotope approach was used to investigate potential trophic niche separation between co-existing rocky shore crabs in the North-West (NW) Arabian Gulf. Leptodius exaratus and Pilumnopeus convexus which occupy similar shore height on the same rocky intertidal habitats. We also investigated conspecific differences between males vs females and adults vs juveniles. δ15N results indicated that adults of both species occupy a high trophic level in the rocky shore community, suggesting similar functional roles and potential for competition for food resources, while significant differences in δ13C values indicated differences in dietary sources between the two species, and also changes in diet between juveniles and adults in both species. MixSIAR analysis of δ15N and δ13C data confirmed field observations that both species are generalist omnivores, with potential for direct competition including adult predation on juveniles, including conspecifics. Differentiation in isotopic niches (SIBER analysis) was mainly driven by the significant differences in δ13C values, suggesting that co-existence of the two crab species is at least in part mediated by trophic niche separation or dietary resource partitioning, with some (unquantified) potential for spatial resource partitioning at the microhabitat level.
Vitrified Walls in the Iron Age of Western Iberia: New Research from an Archaeometric Perspective
- Luis Berrocal-Rangel, Rosario García-Giménez, Lucía Ruano, Raquel Vigil de la Villa
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- Journal:
- European Journal of Archaeology / Volume 22 / Issue 2 / May 2019
- Published online by Cambridge University Press:
- 20 November 2018, pp. 185-209
- Print publication:
- May 2019
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The phenomenon of Iron Age vitrified ramparts has become increasingly recognisable in the last twenty years in the Iberian Peninsula. After the first walls with vitrified stones were discovered in southern Portugal, there have been several findings scattered throughout western Iberia. A chronological sequence from the Late Bronze Age to the Late Iron Age can be established on the basis of the archaeological remains, with reference to different historical and functional conditions. This article reviews the data obtained from the various sites, in order to understand the context in which the stone structures became vitrified. Furthermore, we have analysed samples of stones and mud bricks that have been altered by fire from these sites, which has allowed us to explain the variability in the archaeological record in relation to different historical processes. With all these data, we aim to contribute to our knowledge of a phenomenon that is widespread in Iron Age Europe.
A review of foot-and-mouth disease virus (FMDV) testing in livestock with an emphasis on the use of alternative diagnostic specimens
- Korakrit Poonsuk, Luis Giménez-Lirola, Jeffrey J. Zimmerman
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- Animal Health Research Reviews / Volume 19 / Issue 2 / December 2018
- Published online by Cambridge University Press:
- 22 October 2018, pp. 100-112
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Foot-and-mouth disease virus (FMDV) remains an important pathogen of livestock more than 120 years after it was identified, with annual costs from production losses and vaccination estimated at €5.3–€17 billion (US$6.5–US$21 billion) in FMDV-endemic areas. Control and eradication are difficult because FMDV is highly contagious, genetically and antigenically diverse, infectious for a wide variety of species, able to establish subclinical carriers in ruminants, and widely geographically distributed. For early detection, sustained control, or eradication, sensitive and specific FMDV surveillance procedures compatible with high through-put testing platforms are required. At present, surveillance relies on the detection of FMDV-specific antibody or virus, most commonly in individual animal serum, vesicular fluid, or epithelial specimens. However, FMDV or antibody are also detectable in other body secretions and specimens, e.g., buccal and nasal secretions, respiratory exhalations (aerosols), mammary secretions, urine, feces, and environmental samples. These alternative specimens offer non-invasive diagnostic alternatives to individual animal sampling and the potential for more efficient, responsive, and cost-effective surveillance. Herein we review FMDV testing methods for contemporary and alternative diagnostic specimens and their application to FMDV surveillance in livestock (cattle, swine, sheep, and goats).
Transport of Atrazine and Metribuzin in Three Soils of the Humid Pampas of Argentina
- Francisco Bedmar, Jose Luis Costa, Elvira Suero, Daniel Gimenez
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- Weed Technology / Volume 18 / Issue 1 / March 2004
- Published online by Cambridge University Press:
- 20 January 2017, pp. 1-8
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Widespread groundwater contamination has prompted studies on the fate and transport of solute through soil. Large quantities of atrazine and metribuzin are applied annually in the Humid Pampas of Argentina, creating the need to study the fate of these herbicides in soils of the region. The objective of this work was to study the vertical transport of atrazine and metribuzin in packed soil columns for three loam soils representative of the Humid Pampas of Argentina. Bromide was used as a nonreactive tracer. The convection dispersion equation was fitted to chemical breakthrough data to obtain a parameter characterizing chemical transport. Bromide breakthrough curves (BTCs) were similar among soils. BTCs for atrazine and metribuzin revealed significant interaction among soils and herbicides. The average values for the organic carbon (OC) partition coefficients (Koc) derived from column flow experiments were 119 and 48 ml/g for atrazine and metribuzin, respectively. Metribuzin in leachate was 97.3% of the total recovered, whereas atrazine was 3.5%. This behavior can be explained by their different affinities to OC. The OC contents of the Balcarce, Necochea, and Nueve de Julio soils were 4.1, 3.4, and 1.9%, respectively. The lowest leaching values of herbicides were found in the Balcarce soil, suggesting that OC content was the main factor in controlling herbicide transport in these soils.
Paleoenvironmental and geoarchaeological reconstruction from late Holocene slope records (Lower Huerva Valley, Ebro Basin, NE Spain)
- Fernando Pérez-Lambán, José Luis Peña-Monné, Javier Fanlo-Loras, Jesús V. Picazo-Millán, David Badia-Villas, Virginia Rubio-Fernández, Rosario García-Giménez, María M. Sampietro-Vattuone
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- Quaternary Research / Volume 81 / Issue 1 / January 2014
- Published online by Cambridge University Press:
- 20 January 2017, pp. 1-14
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Slope deposits in semiarid regions are known to be very sensitive environments, especially those that occurred during the minor fluctuations of the late Holocene. In this paper we analyse Holocene colluvium genesis, composition, and paleoenvironmental meaning through the study of slope deposits in NE Spain. Two cumulative slope stages are described during this period. In the study area, both slope accumulations are superimposed and this has enabled an excellent preservation of the aggregative sequence and the paleosols corresponding to stabilisation stages. 14C and TL dating, as well as archaeological remains, provide considerable chronological precision for this sequence. The origin of the accumulation of the lower unit is placed around 4295–4083 cal yr BP/2346–2134 cal yr BC (late Chalcolithic) and it developed until the Iron Age in a cooler and wetter climate (Cold Iron Age). Under favourable conditions, a soil A-horizon was formed on top of this unit. A new slope accumulation was formed during the Little Ice Age. Within the slope two morphogenetic periods ending with A-horizons are distinguished and related with two main cold–wet climatic events. The study of these slopes provides a great amount of data for the paleoenvironmental and geoarchaeological reconstruction of the late Holocene in NE Spain.
Identifying key habitat and seasonal patterns of a critically endangered population of killer whales
- Ruth Esteban, Philippe Verborgh, Pauline Gauffier, Joan Giménez, Isabel Afán, Ana Cañadas, Pedro García, Jose Luis Murcia, Sara Magalhães, Ezequiel Andreu, Renaud de Stephanis
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- Journal of the Marine Biological Association of the United Kingdom / Volume 94 / Issue 6 / September 2014
- Published online by Cambridge University Press:
- 24 September 2013, pp. 1317-1325
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Killer whales have been described in the Gulf of Cadiz, southern Spain, in spring and in the Strait of Gibraltar in summer. A total of 11,276 cetaceans sightings coming from different sources (dedicated research surveys, whale watching companies and opportunistic observations) were used to create two presence–‘pseudo-absence’ predictive generalized additive models (GAM), where presence data were defined as sightings of killer whales and ‘pseudo-absence’ data as sightings of other cetacean species. One model was created using spring data when killer whales’ main prey, Atlantic bluefin tuna, enter the Mediterranean Sea, and the other model used summer data when Atlantic bluefin tuna return to the Atlantic Ocean. Both model predictions show that killer whales are highly associated with a probable distribution of bluefin tuna during their migration throughout the study area, constraining their distribution to the Gulf of Cadiz in spring and the Strait of Gibraltar in spring and summer. Knowledge of the distribution of killer whales in the study area is essential to establish conservation measures for this population.
Inventory of benthic amphipods from fine sand community of the Iberian Peninsula east coast (Spain), western Mediterranean, with new records
- José Antonio De-La-Ossa-Carretero, Jean-Claude Dauvin, Yoana Del-Pilar-Ruso, Francisca Giménez-Casalduero, José Luis Sánchez-Lizaso
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- Journal:
- Marine Biodiversity Records / Volume 3 / June 2010
- Published online by Cambridge University Press:
- 15 December 2010, e119
- Print publication:
- June 2010
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Recent sampling surveys (2004–2008) of the shallow (12–20 m) soft-bottom homogeneous fine-sand community have allowed the collection of 55 marine amphipod species (53 Gammaridea and 2 Caprellidea) along the 250 km of Iberian Peninsula east coast (Spain, Mediterranean Sea). Among the species recorded, one recently described is new to science, five were collected for the first time in the Spanish Mediterranean and 14 were recorded for a second time confirming their presence. Of these 20 species; six are considered to be endemic to the Mediterranean Sea, seven are also north-eastern Atlantic species, and the last seven have a wide geographical distribution in the Indo-Pacific or Arctic and the Atlantic Oceans. Finally, multivariate analyses of species distribution showed changes among locations according to the north–south axis and depth, parameters that highly influence the benthic communities.
Contributors
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- By Rose Teteki Abbey, K. C. Abraham, David Tuesday Adamo, LeRoy H. Aden, Efrain Agosto, Victor Aguilan, Gillian T. W. Ahlgren, Charanjit Kaur AjitSingh, Dorothy B E A Akoto, Giuseppe Alberigo, Daniel E. Albrecht, Ruth Albrecht, Daniel O. Aleshire, Urs Altermatt, Anand Amaladass, Michael Amaladoss, James N. Amanze, Lesley G. Anderson, Thomas C. Anderson, Victor Anderson, Hope S. Antone, María Pilar Aquino, Paula Arai, Victorio Araya Guillén, S. Wesley Ariarajah, Ellen T. Armour, Brett Gregory Armstrong, Atsuhiro Asano, Naim Stifan Ateek, Mahmoud Ayoub, John Alembillah Azumah, Mercedes L. García Bachmann, Irena Backus, J. Wayne Baker, Mieke Bal, Lewis V. Baldwin, William Barbieri, António Barbosa da Silva, David Basinger, Bolaji Olukemi Bateye, Oswald Bayer, Daniel H. Bays, Rosalie Beck, Nancy Elizabeth Bedford, Guy-Thomas Bedouelle, Chorbishop Seely Beggiani, Wolfgang Behringer, Christopher M. Bellitto, Byard Bennett, Harold V. Bennett, Teresa Berger, Miguel A. Bernad, Henley Bernard, Alan E. Bernstein, Jon L. Berquist, Johannes Beutler, Ana María Bidegain, Matthew P. Binkewicz, Jennifer Bird, Joseph Blenkinsopp, Dmytro Bondarenko, Paulo Bonfatti, Riet en Pim Bons-Storm, Jessica A. Boon, Marcus J. Borg, Mark Bosco, Peter C. Bouteneff, François Bovon, William D. Bowman, Paul S. Boyer, David Brakke, Richard E. Brantley, Marcus Braybrooke, Ian Breward, Ênio José da Costa Brito, Jewel Spears Brooker, Johannes Brosseder, Nicholas Canfield Read Brown, Robert F. Brown, Pamela K. Brubaker, Walter Brueggemann, Bishop Colin O. Buchanan, Stanley M. Burgess, Amy Nelson Burnett, J. Patout Burns, David B. Burrell, David Buttrick, James P. Byrd, Lavinia Byrne, Gerado Caetano, Marcos Caldas, Alkiviadis Calivas, William J. Callahan, Salvatore Calomino, Euan K. Cameron, William S. Campbell, Marcelo Ayres Camurça, Daniel F. Caner, Paul E. Capetz, Carlos F. Cardoza-Orlandi, Patrick W. Carey, Barbara Carvill, Hal Cauthron, Subhadra Mitra Channa, Mark D. Chapman, James H. Charlesworth, Kenneth R. Chase, Chen Zemin, Luciano Chianeque, Philip Chia Phin Yin, Francisca H. Chimhanda, Daniel Chiquete, John T. Chirban, Soobin Choi, Robert Choquette, Mita Choudhury, Gerald Christianson, John Chryssavgis, Sejong Chun, Esther Chung-Kim, Charles M. A. Clark, Elizabeth A. Clark, Sathianathan Clarke, Fred Cloud, John B. Cobb, W. Owen Cole, John A Coleman, John J. Collins, Sylvia Collins-Mayo, Paul K. Conkin, Beth A. Conklin, Sean Connolly, Demetrios J. Constantelos, Michael A. Conway, Paula M. Cooey, Austin Cooper, Michael L. Cooper-White, Pamela Cooper-White, L. William Countryman, Sérgio Coutinho, Pamela Couture, Shannon Craigo-Snell, James L. Crenshaw, David Crowner, Humberto Horacio Cucchetti, Lawrence S. Cunningham, Elizabeth Mason Currier, Emmanuel Cutrone, Mary L. Daniel, David D. Daniels, Robert Darden, Rolf Darge, Isaiah Dau, Jeffry C. Davis, Jane Dawson, Valentin Dedji, John W. de Gruchy, Paul DeHart, Wendy J. Deichmann Edwards, Miguel A. De La Torre, George E. Demacopoulos, Thomas de Mayo, Leah DeVun, Beatriz de Vasconcellos Dias, Dennis C. Dickerson, John M. Dillon, Luis Miguel Donatello, Igor Dorfmann-Lazarev, Susanna Drake, Jonathan A. Draper, N. Dreher Martin, Otto Dreydoppel, Angelyn Dries, A. J. Droge, Francis X. D'Sa, Marilyn Dunn, Nicole Wilkinson Duran, Rifaat Ebied, Mark J. Edwards, William H. Edwards, Leonard H. Ehrlich, Nancy L. Eiesland, Martin Elbel, J. Harold Ellens, Stephen Ellingson, Marvin M. Ellison, Robert Ellsberg, Jean Bethke Elshtain, Eldon Jay Epp, Peter C. Erb, Tassilo Erhardt, Maria Erling, Noel Leo Erskine, Gillian R. Evans, Virginia Fabella, Michael A. Fahey, Edward Farley, Margaret A. Farley, Wendy Farley, Robert Fastiggi, Seena Fazel, Duncan S. Ferguson, Helwar Figueroa, Paul Corby Finney, Kyriaki Karidoyanes FitzGerald, Thomas E. FitzGerald, John R. Fitzmier, Marie Therese Flanagan, Sabina Flanagan, Claude Flipo, Ronald B. Flowers, Carole Fontaine, David Ford, Mary Ford, Stephanie A. Ford, Jim Forest, William Franke, Robert M. Franklin, Ruth Franzén, Edward H. Friedman, Samuel Frouisou, Lorelei F. Fuchs, Jojo M. Fung, Inger Furseth, Richard R. Gaillardetz, Brandon Gallaher, China Galland, Mark Galli, Ismael García, Tharscisse Gatwa, Jean-Marie Gaudeul, Luis María Gavilanes del Castillo, Pavel L. Gavrilyuk, Volney P. Gay, Metropolitan Athanasios Geevargis, Kondothra M. George, Mary Gerhart, Simon Gikandi, Maurice Gilbert, Michael J. Gillgannon, Verónica Giménez Beliveau, Terryl Givens, Beth Glazier-McDonald, Philip Gleason, Menghun Goh, Brian Golding, Bishop Hilario M. Gomez, Michelle A. Gonzalez, Donald K. Gorrell, Roy Gottfried, Tamara Grdzelidze, Joel B. Green, Niels Henrik Gregersen, Cristina Grenholm, Herbert Griffiths, Eric W. Gritsch, Erich S. Gruen, Christoffer H. Grundmann, Paul H. Gundani, Jon P. Gunnemann, Petre Guran, Vidar L. Haanes, Jeremiah M. Hackett, Getatchew Haile, Douglas John Hall, Nicholas Hammond, Daphne Hampson, Jehu J. Hanciles, Barry Hankins, Jennifer Haraguchi, Stanley S. Harakas, Anthony John Harding, Conrad L. Harkins, J. William Harmless, Marjory Harper, Amir Harrak, Joel F. Harrington, Mark W. Harris, Susan Ashbrook Harvey, Van A. Harvey, R. Chris Hassel, Jione Havea, Daniel Hawk, Diana L. Hayes, Leslie Hayes, Priscilla Hayner, S. Mark Heim, Simo Heininen, Richard P. Heitzenrater, Eila Helander, David Hempton, Scott H. Hendrix, Jan-Olav Henriksen, Gina Hens-Piazza, Carter Heyward, Nicholas J. Higham, David Hilliard, Norman A. Hjelm, Peter C. Hodgson, Arthur Holder, M. Jan Holton, Dwight N. Hopkins, Ronnie Po-chia Hsia, Po-Ho Huang, James Hudnut-Beumler, Jennifer S. Hughes, Leonard M. Hummel, Mary E. Hunt, Laennec Hurbon, Mark Hutchinson, Susan E. Hylen, Mary Beth Ingham, H. Larry Ingle, Dale T. Irvin, Jon Isaak, Paul John Isaak, Ada María Isasi-Díaz, Hans Raun Iversen, Margaret C. Jacob, Arthur James, Maria Jansdotter-Samuelsson, David Jasper, Werner G. Jeanrond, Renée Jeffery, David Lyle Jeffrey, Theodore W. Jennings, David H. Jensen, Robin Margaret Jensen, David Jobling, Dale A. Johnson, Elizabeth A. Johnson, Maxwell E. Johnson, Sarah Johnson, Mark D. Johnston, F. Stanley Jones, James William Jones, John R. Jones, Alissa Jones Nelson, Inge Jonsson, Jan Joosten, Elizabeth Judd, Mulambya Peggy Kabonde, Robert Kaggwa, Sylvester Kahakwa, Isaac Kalimi, Ogbu U. Kalu, Eunice Kamaara, Wayne C. Kannaday, Musimbi Kanyoro, Veli-Matti Kärkkäinen, Frank Kaufmann, Léon Nguapitshi Kayongo, Richard Kearney, Alice A. Keefe, Ralph Keen, Catherine Keller, Anthony J. Kelly, Karen Kennelly, Kathi Lynn Kern, Fergus Kerr, Edward Kessler, George Kilcourse, Heup Young Kim, Kim Sung-Hae, Kim Yong-Bock, Kim Yung Suk, Richard King, Thomas M. King, Robert M. Kingdon, Ross Kinsler, Hans G. Kippenberg, Cheryl A. Kirk-Duggan, Clifton Kirkpatrick, Leonid Kishkovsky, Nadieszda Kizenko, Jeffrey Klaiber, Hans-Josef Klauck, Sidney Knight, Samuel Kobia, Robert Kolb, Karla Ann Koll, Heikki Kotila, Donald Kraybill, Philip D. W. Krey, Yves Krumenacker, Jeffrey Kah-Jin Kuan, Simanga R. Kumalo, Peter Kuzmic, Simon Shui-Man Kwan, Kwok Pui-lan, André LaCocque, Stephen E. Lahey, John Tsz Pang Lai, Emiel Lamberts, Armando Lampe, Craig Lampe, Beverly J. Lanzetta, Eve LaPlante, Lizette Larson-Miller, Ariel Bybee Laughton, Leonard Lawlor, Bentley Layton, Robin A. Leaver, Karen Lebacqz, Archie Chi Chung Lee, Marilyn J. Legge, Hervé LeGrand, D. L. LeMahieu, Raymond Lemieux, Bill J. Leonard, Ellen M. Leonard, Outi Leppä, Jean Lesaulnier, Nantawan Boonprasat Lewis, Henrietta Leyser, Alexei Lidov, Bernard Lightman, Paul Chang-Ha Lim, Carter Lindberg, Mark R. Lindsay, James R. Linville, James C. Livingston, Ann Loades, David Loades, Jean-Claude Loba-Mkole, Lo Lung Kwong, Wati Longchar, Eleazar López, David W. Lotz, Andrew Louth, Robin W. Lovin, William Luis, Frank D. Macchia, Diarmaid N. J. MacCulloch, Kirk R. MacGregor, Marjory A. MacLean, Donald MacLeod, Tomas S. Maddela, Inge Mager, Laurenti Magesa, David G. Maillu, Fortunato Mallimaci, Philip Mamalakis, Kä Mana, Ukachukwu Chris Manus, Herbert Robinson Marbury, Reuel Norman Marigza, Jacqueline Mariña, Antti Marjanen, Luiz C. L. Marques, Madipoane Masenya (ngwan'a Mphahlele), Caleb J. D. Maskell, Steve Mason, Thomas Massaro, Fernando Matamoros Ponce, András Máté-Tóth, Odair Pedroso Mateus, Dinis Matsolo, Fumitaka Matsuoka, John D'Arcy May, Yelena Mazour-Matusevich, Theodore Mbazumutima, John S. McClure, Christian McConnell, Lee Martin McDonald, Gary B. McGee, Thomas McGowan, Alister E. McGrath, Richard J. McGregor, John A. McGuckin, Maud Burnett McInerney, Elsie Anne McKee, Mary B. McKinley, James F. McMillan, Ernan McMullin, Kathleen E. McVey, M. 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Yee, Viktor Yelensky, Yeo Khiok-Khng, Gustav K. K. Yeung, Angela Yiu, Amos Yong, Yong Ting Jin, You Bin, Youhanna Nessim Youssef, Eliana Yunes, Robert Michael Zaller, Valarie H. Ziegler, Barbara Brown Zikmund, Joyce Ann Zimmerman, Aurora Zlotnik, Zhuo Xinping
- Edited by Daniel Patte, Vanderbilt University, Tennessee
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- The Cambridge Dictionary of Christianity
- Published online:
- 05 August 2012
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- 20 September 2010, pp xi-xliv
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Scale-dependent patterns of variability in species assemblages of the rocky intertidal at Helgoland (German Bight, North Sea)
- Katharina Reichert, Friedrich Buchholz, Inka Bartsch, Thomas Kersten, Luis Giménez
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- Journal of the Marine Biological Association of the United Kingdom / Volume 88 / Issue 7 / November 2008
- Published online by Cambridge University Press:
- 22 July 2008, pp. 1319-1329
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A growing body of literature shows that benthic communities are hierarchically structured on spatial and temporal scales. In two study locations at Helgoland (North Sea), the northern and the western locations, we: (1) investigated the variation in abundance of specific algae and invertebrates at two spatial scales; and (2) evaluated the relationship between elevation and specific species at these scales. We were also interested in using this information about the spatial pattern of individual algae and invertebrates as well as the patterns of elevation to help develop a monitoring programme of the rocky intertidal. We examined the variation of individual algae and invertebrates by means of a hierarchical nested design. Data were taken from five replicates per plot, with plots located in transects (two transects per location).
At the northern location, the highest variability in cover of most algae and invertebrates occurred at the scale separated by about 50 m (scale: transect). This was a direct result of differences between the high- and the low-shore. Most species at high-shore showed a relatively low frequency of occurrence in contrast to a highest frequency of occurence (~100%) and maximal values of cover at low-shore. However, neither a linear nor a non-linear relationship between elevation and the specific species occurred. At the western location, the highest variability in most macroalgae and invertebrates investigated was among replicates (10s of centimetres apart). No relationship between elevation and individual species occurred at this location. Macroalgae at both locations were more consistent over time than invertebrate species. Our results suggest that the relevant processes shaping the individual macroalgae and invertebrates at the Helgoland rocky intertidal vary between locations and the specific species.
The potential causes of variation in macroalgal and invertebrate species at different spatial scales are discussed and suggestions for a future monitoring programme are given. Temporal inconsistency in the spatial patterns, and the fact that some individual algae and invertebrates comprising the benthic assemblages vary at different scales, speak in favour of a multiple-scale sampling approach for monitoring change in the intertidal communities at Helgoland.
DIVISION V: VARIABLE STARS
- Jørgen Christensen-Dalsgaard, Alvaro Giménez, Edward F. Guinan, Conny Aerts, Luis A. Balona, Jorge Sahade
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- Journal:
- Proceedings of the International Astronomical Union / Volume 3 / Issue T26B / December 2007
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- 18 November 2008, pp. 165-167
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- December 2007
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Division V provides a joint forum for the study of stellar variability in all its manifestations, whether due to pulsation, surface inhomogeneities, evolutionary changes, or to eclipses and other phenomena specifically related to double and multiple stars.
Division V: Variable Stars
- Jørgen Christensen-Dalsgaard, Conny Aerts, Alvaro Giménez, Edward F. Guinan, Luis A. Balona, Jorge Sahade
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- Journal:
- Proceedings of the International Astronomical Union / Volume 1 / Issue T26A / December 2005
- Published online by Cambridge University Press:
- 01 December 2005, p. 245
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- December 2005
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Division V, “Variable Stars”, consists of Commission 27, also called “Variable Stars” and Commission 42, “Close Binaries”. Thus the former deals with stars whose variations are intrinsic, whereas in the latter the variations are caused by the interactions between the components in the binary. It is evident that the definition of the Division is predominantly observational, and there may be cases where the assignment of an object to one of the two commissions might be in doubt (a recent somewhat related example was the first detection of an extra-solar planet, in 54 Pegasi, where intrinsic variability of the star in the form of high-order g modes was also initially suspected).