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Gentle jargon

Published online by Cambridge University Press:  05 May 2016

Eberhard O. Voit
Affiliation:
Georgia Institute of Technology
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Summary

Abstraction

The intentional omission or simplification of details of a phenomenon, which allows the design of a manageable conceptual, mathematical or computational model. A representation that focuses on details relevant to the question of interest.

Activator

A molecule or entity that increases the capacity of a process.

Ad hoc model

A mathematical model that is constructed for a specific purpose and without adhering to prescribed model design rules, as opposed to a canonical model.

Adaptive system

A computational or natural system that adjusts its own internal settings to improve its tolerance toward changes in inputs or in its environment.

Affinity

An attractive force between entities. In the case of atoms or molecules, affinity may lead to a chemical reaction.

Agent-based modeling

A simulation method for discrete models, in which each component is an agent whose actions are determined by specific rules. Agents may be humans, animals, cells, molecules or even single atoms.

Algorithm

A sequence of operations or commands constituting a numerical procedure or computer code.

Alkaline

A chemical or solution that is basic, with a pH greater than 7.

Alternative splicing

A mechanism allowing peptides that were transcribed from the same gene and translated from the same mRNA to be combined into different proteins.

Amino acid

The molecular building blocks of proteins. While about 500 amino acids are known, only 22 are used in proteins, and only 20 are directly represented by the genetic code.

Antagonism

A situation where two components act against each other or diminish each other's effect. Antonym of synergism.

Antibody

One of many key proteins of the immune system that sense and neutralize foreign molecules and organisms in the blood. Antibodies are very specific in their binding to non-self entities. Also called an immunoglobulin.

Apoptosis

The technical term for programmed cell death. A complex process in which a cell is genetically programmed to die under certain conditions.

Approximation

The replacement of a (complicated) function with another (simpler) function that retains some, but not all, important features. Usually, the approximation and the approximated function have the same value and the same slope(s) at one point that can be selected as most important for representing a particular situation.

Type
Chapter
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The Inner Workings of Life
Vignettes in Systems Biology
, pp. 165 - 195
Publisher: Cambridge University Press
Print publication year: 2016

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  • Gentle jargon
  • Eberhard O. Voit, Georgia Institute of Technology
  • Book: The Inner Workings of Life
  • Online publication: 05 May 2016
  • Chapter DOI: https://doi.org/10.1017/CBO9781316576618.022
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  • Gentle jargon
  • Eberhard O. Voit, Georgia Institute of Technology
  • Book: The Inner Workings of Life
  • Online publication: 05 May 2016
  • Chapter DOI: https://doi.org/10.1017/CBO9781316576618.022
Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • Gentle jargon
  • Eberhard O. Voit, Georgia Institute of Technology
  • Book: The Inner Workings of Life
  • Online publication: 05 May 2016
  • Chapter DOI: https://doi.org/10.1017/CBO9781316576618.022
Available formats
×