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U.P. Albuquerque , L.H.C. Andrade & J. Caballero (2005) Structure and floristics of homegardens in Northeastern Brazil. Journal of Arid Environments 62: 491–506.
M.A. Altieri (1999) The ecological role of biodiversity in agroecosystems. Agriculture, Ecosystems, and Environment 74: 19–31.
G.I. Andrade & H. Rubio-Torgler (1994) Sustainable use of the tropical rain-forest: evidence from the avifauna in a shifting-cultivation habitat mosaic in the Colombian Amazon. Conservation Biology 8: 545–554.
A. Angelsen & D. Kaimowitz (1999) Rethinking the causes of deforestation: lessons from economic models. The World Bank Research Observer 14: 73–98.
P.M. Attiwill (1994) The disturbance of forest ecosystems: the ecological basis for conservative management. Forest Ecology and Management 63: 247–300.
X. Augusseau , P. Nikiema & E. Torquebiau (2006) Tree biodiversity, land dynamics and farmers' strategies on the agricultural frontier of southwestern Burkina Faso. Biodiversity and Conservation 15: 613–630.
M.M. Backes (2001) The role of indigenous trees for the conservation of biocultural diversity in traditional agroforestry land-use systems: the Bungoma case study. Agroforestry Systems 52: 119–132
N.A. Beecher , R.J. Johnson , J.R. Brandle , R.M. Case & L.J. Young (2002) Agroecology of birds in organic and nonorganic farmland. Conservation Biology 16: 1620–1631.
T.G. Benton , J.A. Vickery & J.D. Wilson (2003) Farmland biodiversity: is habitat heterogeneity the key? Trends in Ecology and Evolution 18: 182–188.
H. Beukema & M. van Noordwijk (2004) Terrestrial pteridophytes as indicators of a forest-like environment in rubber production systems in the lowlands of Jambi, Sumatra. Agriculture Ecosystems and Environment 104: 63–73.
G.F. Bloemers , M. Hodda , P.J.D. Lambshead , J.H. Lawton & F.R. Wanless (1997) The effects of forest disturbance on diversity of tropical soil nematodes. Oecologia 111: 575–582.
D.M.J.S. Bowman , J.C.Z. Woinarski , D.P.A. Sands , A. Wells & V.J. McShane (1990) Slash-and-burn agriculture in the wet coastal lowlands of Papua New Guinea: the response of birds, butterflies and reptiles. Journal of Biogeography 17: 227–239.
T.M. Brooks , S.L. Pimm & J.O. Oyugi (1999) Time lag between deforestation and bird extinction in tropical forest fragments. Conservation Biology 13: 1140–1150.
Kanazawa Y. Budiadi , H.T. Ishii , M. S. Sabarnurdin & P. Suryanto (2005) Productivity of kayu putih (Melaleuca leucadendron LINN) tree plantation managed in non-timber forest production systems in Java, Indonesia. Agroforestry Systems 64: 143–155.
D.F.R. Cleary & A.O. Mooers (2006) Burning and logging differentially affect endemic vs. widely distributed butterfly species in Borneo. Diversity and Distributions 12: 409–416.
D.F.R. Cleary , T.J.B. Boyle , T. Setyawati , C.D. Anggraeni , E.E. Van Loon & S.B.J. Menken (2007) Bird species and traits associated with logged and unlogged forest in Borneo. Ecological Applications 17: 1184–1197.
R.T. Corlett (1995) Tropical secondary forests. Progress in Physical Geography 19: 159–172.
G.C. Daily & P.R. Ehrlich (1995) Preservation of biodiversity in small rain-forest patches: rapid evaluations using butterfly trapping. Biodiversity and Conservation 4: 35–55.
S.A.W. Diemont & J.F. Martin (2005) Management impacts on the trophic diversity of nematode communities in an indigenous agroforestry system of Chiapas, Mexico. Pedobiologia 49: 325–334.
P.F. Donald , A.D. Evans , L.B. Muirhead , D.L. Buckingham , W.B. Kirby & S.I.A. Schmitt (2002) Survival rates, causes of failure and productivity of skylark Alauda arvensis nests on lowland farmland. Ibis 144: 652–664.
P.F. Donald (2004) Biodiversity impacts of some agricultural commodity production systems. Conservation Biology 18: 17–38.
A.J. Dumbrell & J.K. Hill (2005) Impacts of selective logging on canopy and ground assemblages of tropical forest butterflies: implications for sampling. Biological Conservation 125: 123–131.
R.R. Dunn (2000) Isolated trees as foci of diversity in active and fallow fields. Biological Conservation 95: 317–321.
G. Eilu , J. Obua , J.K. Tumuhairwe & C. Nkwine (2003) Traditional farming and plant species diversity in agricultural landscapes of south-western Uganda. Agriculture Ecosystems and Environment 99: 125–134.
P. Eggleton , D.E. Bignell , S. Hauser , L. Dibog , L. Norgrove & B. Madong (2002) Termite diversity across an anthropogenic disturbance gradient in the humid forest zone of West Africa. Agriculture, Ecosystems and Environment 90: 189–202.
P. Eggleton , D.E. Bignell , W.A. Sands , N.A. Mawdsley , J.H. Lawton , T.G. Wood & N.C. Bignell (1996) The diversity, abundance and biomass of termites under differing levels of disturbance in the Mbalmayo Forest Reserve, southern Cameroon. Philosophical Transactions of the Royal Society of London Series B 351: 51–68.
A. Estrada , R. Coates Estrada & D.A. Meritt Jr (1997) Anthropogenic landscape changes and avian diversity at Los Tuxtlas, Mexico. Biodiversity and Conservation 6: 19–43.
S.C. Ewium , M.A. Badejo & O.O. Ajayl (1997) Ants of forest and fallow plots in Nigeria. Biotropica 29: 93–99.
B.G. Ferguson , J. Vandermeer , H. Morales & D.M. Griffith (2003) Post-agricultural succession in El Peten, Guatemala. Conservation Biology 17: 818–828.
H. Fermon , M. Waltert , R.I. Vane-Wright & M. Mühlenberg (2005) Forest use and vertical stratification in fruit-feeding butterflies of Sulawesi, Indonesia: impacts for conservation. Biodiversity and Conservation 14: 333–350.
E.C.M. Fernandes & P.K.R. Nair (1986) An evolution of the structure and function of tropical homegardens. Agricultural Systems 21: 279–310.
K. Fiedler & C.H. Schulze (2004) Forest modification affects diversity (but not dynamics) of speciose tropical pyraloid moth communities. Biotropica 36: 615–627.
C. Fimbel (1994) Ecological correlates of species success in modified habitats may be disturbance-specific and site-specific: the primates of Tiwai island. Conservation Biology 8: 106–113.
A. Floren , A. Freking , M. Biehl & K.E. Linsenmair (2001) Anthropogenic disturbance changes the structure of arboreal tropical ant communities. Ecography 24: 547–554.
S. Fujisaka , L. Hurtado & R.A. Uribe (1996) Working classification of slash-and-burn agricultural systems. Agroforestry Systems 34: 151–169.
S. Fujisaka , G. Escobar & E. Veneklaas (1998) Plant community diversity relative to human land uses in an Amazon forest colony. Biodiversity and Conservation 7: 41–57.
J. Gajaseni & N. Gajaseni (1999) Ecological rationalities of the traditional homegarden system in the Chao Phraya Basin, Thailand. Agroforestry Systems 46: 3–23.
C. Garcia-Fernandez , M.A. Casado & M. Ruiz Perez (2003) Benzoin gardens in north Sumatra, Indonesia: effects of management on tree diversity. Conservation Biology 17: 829–836.
C. Garcia-Fernandez & M.A. Casado (2005) Forest recovery in managed agroforestry systems: the case of benzoin and rattan gardens in Indonesia. Forest Ecology and Management 214: 158–169.
F.J. Gathorne-Hardy , D.T. Jones & Syaukani (2002) A regional perspective on the effects of human disturbance on the termites of Sundaland. Biodiversity and Conservation 11: 1991–2006.
J. Ghazoul (2002) Impact of logging on the richness and diversity of forest butterflies in a tropical dry forest in Thailand. Biodiversity and Conservation 11: 521–541.
A.N. Gillison , D.T. Jones , F.X. Susilo & D.E. Bignell (2003) Vegetation indicates diversity of soil macroinvertebrates: a case study with termites along a land-use intensification gradient in lowland Sumatra. Organism, Diversity and Evolution 3: 111–126.
R.E. Glor , A.S. Flecker , M.F. Benard & A.G. Power (2001) Lizard diversity and agricultural disturbance in a Caribbean forest landscape. Biodiversity and Conservation 10: 711–723.
A. Gouyon , H. de Foresta , & P. Levang (1993) Does ‘jungle rubber’ deserve its name? An analysis of rubber agroforestry systems in southeast Sumatra. Agroforestry Systems 22: 181–206.
M.A. Gray , S.L. Baldauf , P.J. Mayhew & J.K. Hill (2007) The response of avian feeding guilds to tropical forest disturbance. Conservation Biology 21: 133–141.
K.R. Gubista (1999) Small mammals of the Ituri Forest, Zaire: diversity and abundance in ecologically distinct habitats. Journal of Mammalogy 80: 252–262.
C.A. Harvey , J. Gonzalez & E. Somarriba (2006) Dung beetle and terrestrial mammal diversity in forests, indigenous agroforestry systems and plantain monocultures in Talamanca, Costa Rica. Biodiversity and Conservation 15: 555–585.
A. Hemp (2006) The banana forests of Kilimanjaro: biodiversity and conservation of the Chagga homegardens. Biodiversity and Conservation 15: 1193–1217.
M. Jensen (1993) Soil conditions, vegetation structure and biomass of a Javanese homegarden. Agroforestry Systems 24: 171–186.
D.T. Jones , F.X. Susilo , D.E. Bignell , S. Hardiwinoto , A.N. Gillison & P. Eggleton (2003) Termite assemblage collapse along a land-use intensification gradient in lowland central Sumatra, Indonesia. Journal of Applied Ecology 40: 380–391.
L. Kammesheidt (1998) The role of tree sprouts in the restorations of stand-structure and species diversity in tropical moist forest after slash-and-burn agriculture in Eastern Paraguay. Plant Ecology 139 (2): 155–165.
M. Kaya , L. Kammesheidt , H.J. Weidelt (2002) The forest garden system of Saparua island, Central Maluku, Indonesia, and its role in maintaining tree species diversity. Agroforestry Systems 54: 225–234.
K. Kehlenbeck & B.L. Maass (2004) Crop diversity and classification of homegardens in Central Sulawesi, Indonesia. Agroforestry Systems 63: 53–62.
M. Kessler , P.J.A. Kebler , S.R. Gradstein , K. Bach , M. Schmull & R. Pitopang (2005) Tree diversity in primary forest and different land use systems in Central Sulawesi, Indonesia. Biodiversity and Conservation 14: 547–560.
A.M. Klein , I. Steffan-Dewenter & T. Tscharntke (2006) Rain forest promotes trophic interactions and diversity of trap-nesting hymenoptera in adjacent agroforestry. Journal of Animal Ecology 75: 315–323.
B.M. Kumar , S.J. George & S. Chinnamani (1994) Diversity, structure and standing stock of wood in the homegardens of Kerala in peninsular India. Agroforestry Systems 25: 243–262.
S.R. Lamont , W.H. Eshbaugh & A.M. Greenberg (1999) Species composition, diversity, and use of homegardens among three Amazonian villages. Economic Botany 53: 312–326.
D. Lawrence (2004) Erosion of tree diversity during 200 years of shifting cultivation in Bornean Rain Forest. Ecological Applications 14: 1855–1869.
D.C. Lawrence (1996) Trade-offs between rubber production and maintenance of diversity: the structure of rubber gardens in West Kalimantan, Indonesia. Agroforestry Systems 34: 83–100.
J.H. Lawton , D.E. Bignell , B. Bolton , G.F. Bloemers , P. Eggleton , P.M. Hammond , M. Hodda , R.D. Holt , T.B. Larsen , N.A. Mawdsley , N.E. Stork , D.S. Shrivastava & A.D. Watt (1998) Biodiversity inventories, indicator taxa and effects of habitat modification in tropical rain forest. Nature 391: 72–76.
O.F. Linares (1976) Garden hunting in the American tropics. Human Ecology 4: 331–349.
C.L. Long , K. Cai , K. Marr , X. R. Guo & Z.Q. Ouyang (2003) Lacquer-based agroforestry system in western Yunnan, China. Agroforestry Systems 57: 109–116.
G. Loranger , J.F. Ponge , E. Blanchart & P. Lavelle (1998) Influence of agricultural practices on arthropod communities in a vertisol (Martinique). European Journal of Soil Biology 34: 157–165.
A. Marjokorpi & K. Ruokolainen (2003) The role of traditional forest gardens in the conservation of tree species in West Kalimantan, Indonesia. Biodiversity and Conservation 12: 799–822.
S.J. Marsden & J.D. Pilgrim (2003 b) Factors influencing the abundance of parrots and hornbills in primary and selectively logged forests and forest gardens on New Britain, PNG. Ibis 145: 45–53.
S.J. Marsden , C.T. Symes & A.L. Mack (2006) The response of a New Guinean avifauna to conversion of forest to small-scale agriculture. Ibis 148: 629–640.
J. Mathieu , J.P. Rossi , P. Mora , P. Lavelle , P.F.D. Martins , C. Rouland & M. Grimaldi (2005) Recovery of soil macrofauna communities after forest clearance in Eastern Amazonia, Brazil. Conservation Biology 19: 1598–1605.
R.A. Medellín & M. Equihua (1998) Mammal species richness and habitat use in rainforest and abandoned agricultural fields in Chiapas, Mexico. Journal of Applied Ecology 35: 13–23.
R.A. Medellín , M. Equihua & M.A. Amin (2000) Bat diversity and abundance as indicators of disturbance in Neotropical rainforests. Conservation Biology 14: 1666–1675.
V.E. Mendez , R. Lok & E. Somarriba (2001) Interdisciplinary analysis of homegardens in Nicaragua: micro-zonation, plant use and socioeconomic importance. Agroforestry Systems 51: 85–96.
B. Mertens , W.D. Sunderlin , O. Ndoye & E.F. Lambin (2000) Impact of macroeconomic change on deforestation in south Cameroon: integration of household survey and remotely-sensed data. World Development 28: 983–999.
G. Michon , F. Mary & J. Bompard (1986) Multistoried agroforestry garden system in West Sumatra, Indonesia. Agroforestry Systems 4: 315–338.
P.M. Miller & J.B. Kauffman (1998) Effects of slash and burn agriculture on species abundance and composition of a tropical deciduous forest. Forest Ecology and Management 103: 191–201.
G. Moreno-Black , P. Somnasang & S. Thamathawan (1996) Cultivating continuity and creating change: women's home garden practices in northeastern Thailand. Agriculture and Human Values 13: 3–11.
N. Myers (1991) Tropical forests: present status and future outlook. Climatic Change 19: 3–32.
N. Myers , R.A. Mittermeier , C.G. Mittermeier , da G.A.B. Fonseca & J. Kent (2000) Biodiversity hotspots for conservation priorities. Nature 403: 853–858.
R. Naidoo (2004) Species richness and community composition of songbirds in a tropical forest-agricultural landscape. Animal Conservation 7: 93–105.
L. Naughton-Treves , J.L. Mena , A. Treves , N. Alvarez & V.C. Radeloff (2003) Wildlife survival beyond park boundaries: the impact of slash-and-burn agriculture and hunting on mammals in Tambopata, Peru. Conservation Biology 17: 1106–1117.
S.K. Nepal (2002) Involving indigenous peoples in protected area management: comparative perspectives from Nepal, Thailand, and China. Environmental Management 30: 748–763.
C. Padoch & W. de Jong (1991) The house gardens of Santa Rosa: diversity and variability in an Amazonian agricultural system. Economic Botany 45: 166–75.
K Parikesit, Takeuchi ., A. Tsunekawa & O.S. Abdoellah (2004) Kebon tatangkalan: a disappearing agroforest in the Upper Citarum Watershed, West Java, Indonesia. Agroforestry Systems 63: 171–182.
E. Pate , N. Ndiaye , J. Thioulouse , C. Villenave , T. Bongers , P. Cadet & D. Debouzie (2000) Successional trends in the characteristics of soil nematodes communities in cropped and fallow lands in Senegal (Sonkorong). Applied Soil Ecology 14: 5–15.
I. Perfecto , R.C. Rice , R. Greenberg & M.E. Van Der Voort (1996) Shade coffee: a disappearing refuge for biodiversity. Bioscience 46: 598–608.
R.A. Rice & R. Greenberg (2000) Cacao cultivation and the conservation of biological diversity. Ambio 29: 167–174.
V. Rico-Gray , J.G. Garciafranco , A. Chemas , A. Puch & P. Sima (1990) Species composition, similarity, and structure of Mayan home-gardens in Tixepeual and Tixacacaltuyub, Yucatan, Mexico. Economic Botany 44: 470–487.
P.D. Round , G.A. Gale & W.Y. Brockelman (2006) A comparison of bird communities in mixed fruit orchards and natural forest at Khao Luang, southern Thailand. Biodiversity and Conservation 15: 2873–2891.
E.B. Safran & R.A. Godoy (1993) Effects of government policies on smallholder palm cultivation: an example from Borneo. Human Organization 52: 294–298.
F. Schläpfer , B. Schmid & L. Seidl (1999) Expert estimates about effects of biodiversity on ecosystem processes and services. Oikos 84: 346–352.
G. Schroth & C.A. Harvey (2007) Biodiversity conservation in cocoa production landscapes: an overview. Biodiversity and Conservation 16: 2237–2244.
C.H. Schulze , M. Waltert , P.J.A. Kessler , R. Pitopang , D. Shahabuddin Veddeler , M. Mühlenberg , S.R. Gradstein , C. Leuschner , I. Steffan-Dewenter & T. Tscharntke (2004) Biodiversity indicator groups of tropical land-use systems: comparing plants, birds and insects. Ecological Applications 14: 1321–1333.
C.H. Sekercioglu , P.R. Ehrlich , G.C. Daily , D. Aygen , D. Goehring & R.F. Sandi (2002) Disappearance of insectivorous birds from tropical forest fragments. Proceedings of the National Academy of Sciences of the United States of America 99: 263–267.
T.R. Shankar Raman (2001) Effect of slash-and-burn shifting cultivation on rainforest birds in Mizoram, Northeast India. Conservation Biology 15: 685–698.
T.R. Shankar Raman , G.S. Rawat & A.J.T. Johnsingh (1998) Recovery of tropical rainforest avifauna in relation to vegetation succession following shifting cultivation in Mizoram, north-east India. Journal of Applied Ecology 35: 214–231.
B Sinha , T. Hadauria , P.S. Ramarkrishnan , K.G. Saxena & R.K. Maikhuri (2003) Impact of landscape modification on earthworm diversity and abundance in the Hariyali sacred landscape, Garhwal Himilaya. Pedobiologia 47: 357–370.
E. Soini (2006) Bird diversity and land use on the slopes of Mt Kilimanjaro and the adjacent plains, Tanzania. African Zoology 41: 193–209.
N.E. Stork , D.S. Srivastava , A.D. Watt & T.B. Larsen (2003) Butterfly diversity and silvicultural practice in lowland rainforests of Cameroon. Biodiversity and Conservation 12: 387–410.
M.J. Swift & J.M. Anderson (1994) Biodiversity and ecosystem function in agricultural systems. In: Biodiversity and Ecosystem Function, ed. E.D. Schulze & H.A. Mooney , pp. 15–41. Berlin, Germany: Springer-Verlag.
G. Szinicz , K. Martin & J. Sauerborn (2005) Abundance of selected insect species in natural and agricultural habitats of a tropical upland (Leyte, Philippines). Agriculture Ecosystems and Environment 111: 104–110.
J.M. Thiollay (1995) The role of traditional agroforests in the conservation of rain forest bird diversity in Sumatra. Conservation Biology 9: 335–353.
J.M. Thiollay (1999) Responses of an avian community to rain forest degradation. Biodiversity and Conservation 8: 513–534.
D. Tilman , K.G. Cassman , P.A. Matson , P. Naylor & S. Polasky (2002) Agricultural sustainability and intensive production practices. Nature 418: 671–677.
E. Torquebiau (1992) Are tropical agroforestry homegardens sustainable? Agriculture, Ecosystems and Environment 41: 189–207.
J. Vandermeer & I. Perfecto (1997) The agroecosystem: a need for the conservation biologist's lens. Conservation Biology 11: 591–592.
M. Waltert , K.S. Bobo , N.M. Sainge , H. Fermon & M. Muhlenberg (2005) From forest to farmland: habitat effects on Afrotropical forest bird diversity. Ecological Applications 15: 1351–1366.
A. Wezel & S. Bender (2003) Plant species diversity of homegardens of Cuba and its significance for household food supply. Agroforestry Systems 57: 39–49.
A. Wezel & J. Ohl (2005) Does remoteness from urban centres influence plant diversity in homegardens and swidden fields? A case study from the Matsiguenka in the Amazonian rain forest of Peru. Agroforestry Systems 65: 241–251.
D.S. Wilkie & J.T. Finn (1990) Slash-burn cultivation and mammal abundance in the Ituri Forest, Zaire. Biotropica 22: 90–99.
L. Zapfack , S. Engwald , B. Sonke , G. Achoundong & B.A. Madong (2002) The impact of land conversion on plant biodiversity in the forest zone of Cameroon. Biodiversity and Conservation 11: 2047–2061.