Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

Peter H. Li; Larry F. Lindsey; Michał Januszewski; Mike Tyka; Jeremy Maitin-Shepard; Tim Blakely; Viren Jain

doi:10.1017/S1431927619007554

Abstract

An abstract is not available for this content so a preview has been provided. As you have access to this content, a full PDF is available via the ‘Save PDF’ action button.

Image of the first page of this content. For PDF version, please use the ‘Save PDF’ preceeding this image.'

References

[1]Kornfeld, J and Denk, W, Curr Opin Neurobiol 50 (2018), p. 261.Google Scholar

[2]Zheng, Z et al. , Cell 174 (2018), p. 730.Google Scholar

[3]Saalfeld, S et al. , Nat Methods 9 (2012), p. 717.Google Scholar

[4]Wetzel, AW et al. , AIPR (2016) p. 1.Google Scholar

[5]Schneider-Mizell, CM et al. , eLife 5 (2016).Google Scholar

[6]Januszewski, M et al. , Nat Methods 15 (2018), p. 605.Google Scholar

[7]Takemura, SY et al. , PNAS 112 (2015), p. 13711.Google Scholar

Crossref Citations

This article has been cited by the following publications. This list is generated based on data provided by Crossref.

Natale, Joseph L. Hentschel, H. George E. and Nemenman, Ilya 2020. Precise spatial memory in local random networks. Physical Review E, Vol. 102, Issue. 2,

Yuan, Jingbin Zhang, Jing Shen, Lijun Zhang, Dandan Yu, Wenhuan and Han, Hua 2020. Massive Data Management and Sharing Module for Connectome Reconstruction. Brain Sciences, Vol. 10, Issue. 5, p. 314.

Wang, Shida and Huang, Jin 2020. Breast Lesion Segmentation in Ultrasound Images by CDeep3M. p. 907.

Cardwell, Suma George Vineyard, Craig Severa, Willam Chance, Frances S. Rothganger, Frederick Wang, Felix Musuvathy, Srideep Teeter, Corinne and Aimone, James B. 2020. Driving Scientific and Engineering Discoveries Through the Convergence of HPC, Big Data and AI. Vol. 1315, Issue. , p. 349.

Bell, Miriam K. and Rangamani, Padmini 2021. Design decisions for incorporating spatial and mechanical aspects in models of signaling networks. Current Opinion in Systems Biology, Vol. 25, Issue. , p. 70.

Buhmann, Julia Sheridan, Arlo Malin-Mayor, Caroline Schlegel, Philipp Gerhard, Stephan Kazimiers, Tom Krause, Renate Nguyen, Tri M. Heinrich, Larissa Lee, Wei-Chung Allen Wilson, Rachel Saalfeld, Stephan Jefferis, Gregory S. X. E. Bock, Davi D. Turaga, Srinivas C. Cook, Matthew and Funke, Jan 2021. Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set. Nature Methods, Vol. 18, Issue. 7, p. 771.

Barsotti, Elizabeth Correia, Ana and Cardona, Albert 2021. Neural architectures in the light of comparative connectomics. Current Opinion in Neurobiology, Vol. 71, Issue. , p. 139.

Scheffer, Louis K. and Meinertzhagen, Ian A. 2021. A connectome is not enough – what is still needed to understand the brain ofDrosophila?. Journal of Experimental Biology, Vol. 224, Issue. 21,

Liu, Jing Hong, Bei Chen, Xi Xie, Qiwei Tang, Yuanyan and Han, Hua 2021. An effective AI integrated system for neuron tracing on anisotropic electron microscopy volume. Biomedical Signal Processing and Control, Vol. 69, Issue. , p. 102829.

Zhang, Chi Chen, Qihua and Chen, Xuejin 2022. Medical Image Computing and Computer Assisted Intervention – MICCAI 2022. Vol. 13438, Issue. , p. 99.

Engert, Stefanie Sterne, Gabriella R Bock, Davi D and Scott, Kristin 2022. Drosophila gustatory projections are segregated by taste modality and connectivity. eLife, Vol. 11, Issue. ,

Deng, Shiyu Huang, Wei Chen, Chang Fu, Xueyang and Xiong, Zhiwei 2022. A Unified Deep Learning Framework for ssTEM Image Restoration. IEEE Transactions on Medical Imaging, Vol. 41, Issue. 12, p. 3734.

Liu, Xiaoyu Hu, Bo Li, Mingxing Huang, Wei Zhang, Yueyi and Xiong, Zhiwei 2023. A Soma Segmentation Benchmark in Full Adult Fly Brain. p. 7402.

Lee, Hassal Ciabatti, Ernesto González-Rueda, Ana Williams, Elena Nugent, Fiona Mookerjee, Souradip Morgese, Fabio and Tripodi, Marco 2023. Combining long-term circuit mapping and network transcriptomics with SiR-N2c. Nature Methods, Vol. 20, Issue. 4, p. 580.

Bhattacharjee, Anindita Das Majumdar, Debi Dey, Snehil and Sarkar, Srijita 2023. Advancing Connectomics: High-Precision Neural Structure Segmentation Using U-Net-Based Model. p. 0420.

Sheridan, Arlo Nguyen, Tri M. Deb, Diptodip Lee, Wei-Chung Allen Saalfeld, Stephan Turaga, Srinivas C. Manor, Uri and Funke, Jan 2023. Local shape descriptors for neuron segmentation. Nature Methods, Vol. 20, Issue. 2, p. 295.

Laturney, Meghan Sterne, Gabriella R and Scott, Kristin 2023. Mating activates neuroendocrine pathways signaling hunger in Drosophila females. eLife, Vol. 12, Issue. ,

González Segarra, Amanda J Pontes, Gina Jourjine, Nicholas Del Toro, Alexander and Scott, Kristin 2023. Hunger- and thirst-sensing neurons modulate a neuroendocrine network to coordinate sugar and water ingestion. eLife, Vol. 12, Issue. ,

Zhao, Jingjing Yu, Xiaoping Shentu, Xuping and Li, Danting 2024. The application and development of electron microscopy for three-dimensional reconstruction in life science: a review. Cell and Tissue Research,

Download full list

Article contents

Automated Reconstruction of a Serial-Section EM Drosophila Brain with Flood-Filling Networks and Local Realignment

Abstract

References

Save article to Kindle

Save article to Dropbox

Save article to Google Drive

Reply to: Submit a response

Your details

You have entered the maximum number of contributors

Conflicting interests