Non-confocal Laser Scanning Microscopy (LSCM) was developed to allow applying the tenents of flow cytometery to specimens attached to a microscope slide (1). Areas of the slide are scanned, fluorescently labled cells are automatically segmented, and a list of features for each cell is calculated and stored in a list mode data file. Figure 1 shows a block diagram of the LSCM. A collimated laser beam scans in the y direction, and values from photomultiplier and photodiode detectors are digitized to .25 micron resolution. The automated stage advances in .5 micron steps in the x direction. When cascading memory banks are filled, the “image” is segmented. Figure 2 shows contours drawn as part of the segmentation process. The innermost contour is drawn around pixels that exceed a predetermined threshold, and is used to define events. Other contours are used to define integration areas, background calculation and correction, and integrating nuclear vs. peripheral fluorescence areas.