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Delineation of the European Armillaria species based on the sequences of the internal transcribed spacer (ITS) of ribosomal DNA

Published online by Cambridge University Press:  01 March 1998

MOHAMMED CHILLALI
Affiliation:
Université Henri Poincaré Nancy 1, Laboratoire de Biologie Forestière associé INRA, BP 239, 54506 Vandoeuvre les Nancy Cedex, France
DANIEL WIPF
Affiliation:
Université Henri Poincaré Nancy 1, Laboratoire de Biologie Forestière associé INRA, BP 239, 54506 Vandoeuvre les Nancy Cedex, France
JEAN-JACQUES GUILLAUMIN
Affiliation:
Institut National de la Recherche Agronomique, Laboratoire de Mycologie, Domaine de Crouelle, 63039 Clermont-Ferrand Cedex, France
CAROLINE MOHAMMED
Affiliation:
University of Tasmania, Department of Agricultural Science, BPO Box 252C, Hobart, Tasmania 7001, Australia
BERNARD BOTTON
Affiliation:
Université Henri Poincaré Nancy 1, Laboratoire de Biologie Forestière associé INRA, BP 239, 54506 Vandoeuvre les Nancy Cedex, France
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Abstract

Variation within the internal transcribed spacer (ITS) of the ribosomal RNA gene of 15 isolates representing seven European Armillaria species, was examined by sequencing of the PCR-amplified products. The analysis of an 744-bp region showed that the 5.8S gene appeared to be highly conserved in the 15 isolates and in other Basidiomycetes and Ascomycetes, whereas ITS1 and especially ITS2 spacers exhibited polymorphisms due to base substitutions, insertions or deletions of up to eight nucleotides. An initial dendrogram for the full sequence was drawn using cluster analysis (UPGMA), and a tree was constructed using the maximum parsimony method. Both methods indicated that the isolates could be divided into four major groups. One group, consisting of A. ectypa, was distinct from all the other species. Examination of the other groups indicated that A. tabescens and A. mellea were in a separated cluster, with a significant variation between the two isolates of the latter species. A. gallica and A. cepistipes constituted another closely related group distinguishable from A. ostoyae and A. borealis, these latter two species exhibiting the highest similarity. The results are consistent with, and discussed in regard to, the relationships estimated previously by pairing tests, morphological and physiological comparisons, as well as by restriction fragment length polymorphism of the rDNA.

Type
Research Article
Copyright
© Trustees of the New Phytologist 1998

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