Statistical design and the analysis of gene expression microarray data

M. KATHLEEN KERR; GARY A. CHURCHILL

doi:10.1017/S0016672308009713

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Crossref Citations

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Lindroos, H. and Andersson, S.G.E. 2002. Visualizing metabolic pathways: comparative genomics and expression analysis. Proceedings of the IEEE, Vol. 90, Issue. 11, p. 1793.

Nagarajan, R. 2003. Intensity-based segmentation of microarray images. IEEE Transactions on Medical Imaging, Vol. 22, Issue. 7, p. 882.

Lalush, D.S. 2003. Effects of spot and background defects on quantitative data from spotted microarrays. p. 3563.

Peng, Wei and Li, Tao 2006. IntClust: A Software Package for Clustering Replicated Microarray Data. p. 103.

Stokes, Todd H. Han, Xiao Moffitt, Richard A. and Wang, May D. 2007. Extending Microarray Quality Control and Analysis Algorithms to Illumina Chip Platform. p. 4637.

Knapen, Dries Vergauwen, Lucia Laukens, Kris and Blust, Ronny 2009. Best practices for hybridization design in two-colour microarray analysis. Trends in Biotechnology, Vol. 27, Issue. 7, p. 406.

Sifakis, Emmanouil G Lambrou, George I Prentza, Andriana Vlahopoulos, Spiros Koutsouris, Dimitris Tzortzatou-Stathopoulou, Fotini and Chatziioannou, Aristotelis A 2011. Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach. Journal of Clinical Bioinformatics, Vol. 1, Issue. 1, p. 36.

Yauk, Carole Lyn Jackson, Kelly Malowany, Morie and Williams, Andrew 2011. Lack of change in microRNA expression in adult mouse liver following treatment with benzo(a)pyrene despite robust mRNA transcriptional response. Mutation Research/Genetic Toxicology and Environmental Mutagenesis, Vol. 722, Issue. 2, p. 131.

Woo, Yong H. and Li, Wen-Hsiung 2011. Gene clustering pattern, promoter architecture, and gene expression stability in eukaryotic genomes. Proceedings of the National Academy of Sciences, Vol. 108, Issue. 8, p. 3306.

Malin, Anna Zhang, Jun Jason Chakraborty, Bhavana Kovvali, Narayan Papandreou-Suppappola, Antonia Johnston, Stephen and Stafford, Phillip 2011. Adaptive learning of immunosignaturing peptide array features for biothreat detection and classification. p. 1883.

Mehta, Jai Prakash 2011. Gene Expression Profiling. Vol. 784, Issue. , p. 27.

Halappanavar, Sabina Jackson, Petra Williams, Andrew Jensen, Keld A. Hougaard, Karin S. Vogel, Ulla Yauk, Carole L. and Wallin, Håkan 2011. Pulmonary response to surface‐coated nanotitanium dioxide particles includes induction of acute phase response genes, inflammatory cascades, and changes in microRNAs: A toxicogenomic study. Environmental and Molecular Mutagenesis, Vol. 52, Issue. 6, p. 425.

Halappanavar, Sabina Wu, Dongmei Williams, Andrew Kuo, Byron Godschalk, Roger W. Van Schooten, Frederik J. and Yauk, Carole Lyn 2011. Pulmonary gene and microRNA expression changes in mice exposed to benzo(a)pyrene by oral gavage. Toxicology, Vol. 285, Issue. 3, p. 133.

Khan, Raheela 2011. Gynaecology. p. 156.

Jackson, Petra Hougaard, Karin S. Vogel, Ulla Wu, Dongmei Casavant, Lorraine Williams, Andrew Wade, Mike Yauk, Carole L. Wallin, Håkan and Halappanavar, Sabina 2012. Exposure of pregnant mice to carbon black by intratracheal instillation: Toxicogenomic effects in dams and offspring. Mutation Research/Genetic Toxicology and Environmental Mutagenesis, Vol. 745, Issue. 1-2, p. 73.

O'Brien, M.A. Costin, B.N. and Miles, M.F. 2012. Bioinformatics of Behavior: Part 2. Vol. 104, Issue. , p. 91.

Tan, Qihua Thomassen, Mads and Kruse, Torben A. 2012. Latent growth curve modeling of incomplete timecourse data in microarray gene expression studies. p. 100.

Malik, Amal I. Williams, Andrew Lemieux, Christine L. White, Paul A. and Yauk, Carole L. 2012. Hepatic mRNA, microRNA, and miR‐34a‐Target responses in mice after 28 days exposure to doses of benzo(a)pyrene that elicit DNA damage and mutation. Environmental and Molecular Mutagenesis, Vol. 53, Issue. 1, p. 10.

Cheng, Wei-Chung Shu, Wun-Yi Li, Chia-Yang Tsai, Min-Lung Chang, Cheng-Wei Chen, Chaang-Ray Cheng, Hung-Tsu Wang, Tzu-Hao Hsu, Ian C. and Jordan, I. King 2012. Intra- and Inter-Individual Variance of Gene Expression in Clinical Studies. PLoS ONE, Vol. 7, Issue. 6, p. e38650.

Zhou, Jerry Belov, Larissa Armstrong, Nicola and Christopherson, Richard I. 2013. Bioinformatics of Human Proteomics. Vol. 3, Issue. , p. 331.

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Statistical design and the analysis of gene expression microarray data

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