Abstract
A transmembrane voltage, arising from ion imbalance between the extracellular and cytoplasmic sides of a cell, can influence the biological function of transmembrane proteins. At the atomistic scale, transmembrane voltage can be modeled thanks to the application of an external electric field. Here, we introduce a new QM/MM model capable of efficiently describing the interaction of QM and MM atoms with a static electric field (SEF) thanks to ElectroStatic Potential Fitted (ESPF) operators. A simple decomposition of the full interaction energy is proposed in terms of electrostatic QM/MM interactions and interactions of QM and MM multipoles with the SEF. Having validated the method and tested its limitations in the case of a short protonated Schiff base model, it is applied to the case of the Gloeobacter Rhodopsin, a transmembrane photoactive protein with potential applications in optogenetics. In particular, we evidence that a weak electric field only perturb the local electric field, due to the protein amino-acids.
Supplementary materials
Title
Supplementary Information to "Towards the modeling of static electric field effects in rhodopsin photophysics using QM/MM calculations"
Description
Inputs for OpenMolcas/Tinker calculations, in the case of water, and PSB3; comparision between FFPT, ESPF0 and ESPF1 for N2, CO2, benzene; comparison between FFPT and ESPF state energies along the PSB3 MEP; OpenMolcas/Tinker inputs for GR XMS-CASPT2 singles points and geometry optimizations; link to the GR geometries; computation of CoC; GR state energies.
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Supplementary weblinks
Title
GR structures along the retinal isomerization pathway
Description
The Tinker-XYZ geometries of the S0 as well as the S1 optimised structures, for various torsion angles
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