Discovery of the directing effect of indole for non-aromatic C-H activation in the palladium-catalyzed cross-dehydrogenative coupling with β-ketoesters

29 August 2025, Version 1
This content is an early or alternative research output and has not been peer-reviewed by Cambridge University Press at the time of posting.

Abstract

Connecting two carbon atoms is both a routine and fascinating challenge in modern synthetic chemistry. In this work, we establish a palladium-catalyzed cross-dehydrogenative coupling (CDC) of the α-carbon of β-ketoesters with the C3-benzylic position of indoles as a direct and efficient approach to C(sp3)-C(sp3) bond formation. This study uncovers the unexpected directing effect of indole in the selective activation of aliphatic C-H bonds, significantly broadening the scope of CDC reactions. The developed protocol exhibits high tunability, a broad substrate scope, and excellent yields under mild conditions, highlighting its potential for late-stage functionalization in pharmaceutical and material science applications. Additionally, the transformation integrates well into one-pot and multicomponent processes as well as enables stereoselective functionalization of the steroid core. Kinetic studies and density functional theory (DFT) calculations provide key mechanistic insights into the reaction pathway. Initial π-coordination of indole to palladium directs selective C(sp)–H activation via agostic interaction. The C–C coupling is proposed to proceed with the involvement of Pd(IV) intermediates, highlighting the critical role of the oxidant in the process. Product decomplexation emerges as the likely rate-determining step, consistent with the observed first-order dependence of the reaction rate on catalyst concentration.

Keywords

indole
ketoester
sp3-sp3 coupling
C-H activation
palladium catalysis

Supplementary materials

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Supporting Information INBAT
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Here you can find all the synthetic procedures and characterization of the products: including NMR data, XRD, etc.
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Raw NMR data INBAT
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Here you can find the raw NMR spectra of all synthesized products
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XYZ data
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Here you can find the XYZ structures related to the computational studies
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