Abstract
The $a-m$ model governed by the equation $ay^3+y=mx$ with $a>0$, traces S-curves on an $xy-$ plane. Their superposition has been used to model the protease kinetic activity on various substrates as well as growth of yeast cultures, bacterial colonies, plants, and animals. Enzyme kinetics and growth are dynamic processes that exhibit correlations across multiple temporal scales. However, concrete conclusions about the time-scale dependence using a generic model are absent in the literature. In this paper, we analyze the Fourier representation of the $a-m$ model superposition and observe the black noise spectrum, which shows extreme peaking at low frequencies. This reflects the observed self-organization nature of these dynamic processes with marked persistence. Based on the Fourier sum, we conclude that both dynamic processes are linear along with dominant slow-varying oscillations in time. In other words, both processes reach saturation at a constant rate with the added autocorrelated black noise.
Supplementary weblinks
Title
Identifying persistence using Fourier representation of kinetics and growth dynamics
Description
The link consists of pickle files and a code file. The code file does the Fourier transform using numpy.fft but includes a dominant linear term that is missing in the FFT algorithm implementation. With the term included we get an accurate representation that is not possible with just the FFT. The resulting spectrum resembles black noise which is a signature of self-organization fractal like self-similar dynamics in the enzyme catalysis and growth processes. We consider protease MMP13 reaction on peptide substrate PX3 and Drosophila population growth as examples.
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