Retrieval-Augmented Large Language Models for Chemistry: A Comprehensive Survey

13 January 2026, Version 1
This content is an early or alternative research output and has not been peer-reviewed by Cambridge University Press at the time of posting.

Abstract

The rapid proliferation of Large Language Models (LLMs) has heralded a new era in artificial intelligence, demonstrating remarkable capabilities in understanding, generating, and reasoning with human language. Their potential to revolutionize scientific discovery, particularly in chemistry, is immense. However, standalone LLMs are inherently limited by their reliance on static pre-training data, leading to issues such as factual hallucination, outdated knowledge, and a lack of transparency in their reasoning processes. Retrieval-Augmented Generation (RAG) has emerged as a powerful paradigm to mitigate these limitations by grounding LLM responses in external, up-to-date, and verifiable knowledge sources. This survey provides a comprehensive overview of the intersection of RAG and LLMs within the chemical sciences. We delve into the foundational concepts of LLMs and RAG, detail the unique architectures and methodologies required for handling diverse chemical data, and systematically review their applications across drug discovery, materials science, reaction prediction, and chemical literature mining. Furthermore, we critically examine the existing challenges, limitations, and ethical considerations inherent in deploying RAG-LLMs in chemistry. Finally, we discuss promising future directions, emphasizing the need for robust evaluation benchmarks and advanced multimodal RAG systems to unlock the full potential of these transformative technologies in accelerating chemical innovation.

Keywords

Retrieval-Augmented Generation
Large Language Models
Chemical Informatics
Drug Discovery
Materials Science
Multimodal Learning

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