Skip to main content Accessibility help
×
Hostname: page-component-848d4c4894-pjpqr Total loading time: 0 Render date: 2024-06-20T10:01:16.812Z Has data issue: false hasContentIssue false

18 - Microbiological blood testing and new technologies

from Section 2 - Selection and testing

Published online by Cambridge University Press:  12 January 2010

Juraj Petrik
Affiliation:
Head, Microbiology Research and Development, Scottish National Blood Transfusion Service, TTI Department Royal (Dick) Veterinary College, Edinburgh, UK
John A. J. Barbara
Affiliation:
University of the West of England, Bristol
Fiona A. M. Regan
Affiliation:
HNSBT and Hammersmith Hospitals NHS Trust, London
Marcela Contreras
Affiliation:
University of the West of England, Bristol
Get access

Summary

Current testing methods: brief technology background

Current microbiological testing is discussed in detail in Chapters 11 and 12. Preventive measures, inactivation and microbiology testing as performed, at least in developed countries, guarantee an extremely safe blood supply (Barbara, 1998). Recently, a technologically demanding and conceptually different type of testing, NAT (discussed in Chapter 14), has been implemented as a routine procedure. In countries with high development indices, residual risk estimates, especially for transfusion-transmitted viruses, are very low (Soldan et al., 2003) and not many other medical procedures (if any) can match them. Of course, there is always room for improvement on safety: a level of automation to limit operator-related errors, cost-efficiency, etc.

In order to compare the power of current testing techniques with the potential of newly developed candidate next generation testing techniques, a brief summary of current testing technologies follows.

Unique features of microbiological blood screening

Various aspects of microbiological blood screening make it a rather unique process when compared with other testing procedures for infectious agents (see Table 18.1). Under usual circumstances people are tested for infectious agents on the basis of symptoms at or after a visit to a primary care physician, or during a stay in hospital. In other words, the physician or hospital microbiology laboratory personnel know what range of tests to perform on the basis of the referral or a preliminary diagnosis. Consequently, a large proportion of tested samples will give a positive result for one or more tested pathogens.

Type
Chapter
Information
Publisher: Cambridge University Press
Print publication year: 2008

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Angenendt, P., Glokler, J., Konthur, Z., et al. (2003). 3D protein microarrays: performing multiplex immunoassays on a single chip. Anal Chem, 75, 4368–72.CrossRefGoogle ScholarPubMed
Bacarese-Hamilton, T., Messazoma, L., Ardizzoni, A., et al. (2004) Serodiagnosis of infectious diseases with antigen microarrays. J Appl Microbiol, 96, 10–17.CrossRefGoogle ScholarPubMed
Barbara, J. A. (1998) Prevention of infections transmissible by blood derivatives. Transfus Sci, 19, 3–7.CrossRefGoogle ScholarPubMed
Boriskin, Y. S., Rice, P. S., Stabler, R. A., et al. (2004). DNA microarrays for virus detection in cases of central nervous system infection. J Clin Microbiol, 42, 5811–18.CrossRefGoogle ScholarPubMed
Briggs, J. A. G., Wilk, T., Welker, R., et al. (2003) Structural organisation of authentic, mature HIV-1 virions and cores. The EMBO Journal, 22, 1707–15.CrossRefGoogle Scholar
Brown, P. O. and Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays. Nat Gen, 21, 33–7.CrossRefGoogle ScholarPubMed
Bussow, K., Cahill, D., Nietfeld, W., et al. (1998) A method for global protein expression and antibody screening on high-density filters of an arrayed cDNA library. Nucleic Acids Res, 26, 5007–8.CrossRefGoogle ScholarPubMed
Cheng, J., Sheldon, E. L., Wu, L., et al. (1998) Preparation and hybridization analysis of DNA/RNA from E. coli on microfabricated bioelectronic chips. Nat Biotechnol, 16, 541–6.CrossRefGoogle Scholar
Cummings, A. and Relman, D. A. (2000) Using DNA microarrays to study host-microbe interactions. Emerg Infect Dis, 6, 513–25.CrossRefGoogle ScholarPubMed
Duburcq, X., Olivier, C., Malingue, F., et al. (2004) Peptide-protein microarrays for the simultaneous detection of pathogen infections. Bioconjug Chem, 15, 307–16.CrossRefGoogle ScholarPubMed
Ekins, R. P. (1998) Ligand assays: from electrophoresis to miniaturized microarrays. Clin Chem, 44, 2015–30.Google ScholarPubMed
Ekins, R. P. and Chu, F. W. (1991) Multianalyte microspot immunoassay – microanalytical ‘compact disk’ of the future. Clin Chem, 37, 1955–67.Google Scholar
Fodor, S. P. A., Read, J. L., Pirrung, M. C., et al. (1991) Light-directed, spatially addressable parallel chemical synthesis. Science, 251, 767–73.CrossRefGoogle ScholarPubMed
Foldes-Papp, Z., Egerer, R., Birch-Hirschfeld, E., et al. (2004) Detection of multiple human herpes viruses by DNA microarray technology. Mol Diagn, 8, 1–9.CrossRefGoogle ScholarPubMed
Francois, P., Bento, M., Vaudaux, P., et al. (2003) Comparison of fluorescence and resonance light scattering for highly sensitive microarray detection of bacterial pathogens. J Microbiol Methods, 55, 755–62.CrossRefGoogle Scholar
Fukui, S., Feizi, T., Galustian, C., et al. (2002) Oligosaccharide microarrays for high-throughput detection and specificity assignments of carbohydrate-protein interactions. Nat Biotechnol, 20, 1011–7.CrossRefGoogle ScholarPubMed
Fung, E. T., Thulasiraman, V., Weinberger, S. R., et al. (2001) Protein biochips for differential profiling. Curr Opin Biotechnol, 12, 65–9.CrossRefGoogle ScholarPubMed
Haab, B. B., Dunham, M. J. and Brown, P. O. (2001) Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biol, 2, Research, 0004.CrossRefGoogle ScholarPubMed
Karsten, S. L., Deerlin, V. M. D., Sabatti, C., et al. (2002) An evaluation of tyramide signal amplification and archived fixed and frozen tissue in microarray gene expression analysis. Nucleic Acids Res, 30, e4.CrossRefGoogle ScholarPubMed
Klaassen, C. H. W., Prinsen, C. F. M., Valk, H. A., et al. (2004) DNA microarray format for detection and subtyping of human Papillomavirus. J Clin Microbiol, 42, 2152–60.CrossRefGoogle ScholarPubMed
Kononen, J., Bubendorf, L., Kallioniemi, A., et al. (1998) Tissue microarrays for high-throughput molecular profiling of tumor specimens. Nat Med, 4, 844–7.CrossRefGoogle ScholarPubMed
Kuruvilla, F. G., Shamji, A. F., Sternson, S. M., et al. (2002) Dissecting glucose signalling with diversity-oriented synthesis and small-molecule microarrays. Nature, 416, 653–7.CrossRefGoogle ScholarPubMed
Lian, W., Litherland, S. A., Badrane, H., et al. (2004) Ultrasensitive detection of biomolecules with fluorescent dye-doped nanoparticles. Anal Biochem, 334, 135–44.CrossRefGoogle ScholarPubMed
Lin, B., Vora, G. J., Thach, D., et al. (2004) Use of oligonucleotide microarrays for rapid detection and serotyping of acute respiratory disease-associated adenoviruses. J Clin Microbiol, 42, 3232–9.CrossRefGoogle ScholarPubMed
Lovmar, L., Fock, C., Espinoza, F., et al. (2003) Microarrays for genotyping human group A rotavirus by multiplex capture and type-specific primer extension. J Clin Microbiol, 41, 5153–8.CrossRefGoogle Scholar
Lu, D.-D., Chen, S.-H., Zhang, S.-M., et al. (2005) Screening of specific antigens for SARS clinical diagnosis using a protein microarray. Analyst, 130, 474–82.CrossRefGoogle ScholarPubMed
MacBeath, G. and Schreiber, S. L. (2000) Printing proteins as microarrays for high-throughput function determination. Science, 289, 1760–3.Google ScholarPubMed
MacGregor, P. F. and Squire, J. A. (2002) Application of microarrays to the analysis of gene expression in cancer. Clin Chem, 48, 1170–77.Google Scholar
Mackay, I. M., Arden, K. E. and Nitsche, A. (2002) Real time PCR in virology. Nucleic Acids Res, 30, 1292–305.CrossRefGoogle ScholarPubMed
Mendoza, L. G., McQuary, P., Mongan, A., et al. (1999) High-throughput microarray-based enzyme-linked immunosorbent assay (ELISA). Biotechniques, 27, 782–6.Google Scholar
Michael, K. L., Taylor, L. C., Schultz, S. L., et al. (1998) Randomly ordered addressable high-density optical sensor arrays. Anal Chem, 70, 1242–8.CrossRefGoogle ScholarPubMed
Nallur, G., Luo, C., Fang, L., et al. (2001) Signal amplification by rolling circle amplification on DNA microarrays. Nucleic Acids Res, 29, e118.CrossRefGoogle ScholarPubMed
Pawlak, M., Schick, E., Bopp, M. A., et al. (2002) Zeptosens' protein microarrays: a novel high performance microarray platform for low abundance protein analysis. Proteomics 2, 383–93.3.0.CO;2-E>CrossRefGoogle ScholarPubMed
Petrik, J. (2001) Microarray technology: the future of blood testing?Vox Sang, 80, 1–11.CrossRefGoogle ScholarPubMed
Rao, R. S., Visuri, S. R., McBride, M. T., et al. (2004) Comparison of multiplexed techniques for detection of bacterial and viral proteins. J Proteome Res, 3, 736–42.CrossRefGoogle ScholarPubMed
Schena, M., Shalon, D., Davis, R. W., et al., (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467–70.CrossRefGoogle ScholarPubMed
Schweitzer, B., Wiltshire, S., Lambert, J., et al. (2000) Immunoassays with rolling circle DNA amplification: a versatile platform for ultrasensitive antigen detection. Proceedings of the National Academy of Sciences, 97, 10113–9.CrossRefGoogle ScholarPubMed
Shalon, D., Smith, S. J. and Brown, P. O. (1996) A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization. Genome Methods, 6, 301–6.Google ScholarPubMed
Shi, M. M. (2002) Technologies for individual genotyping detection of genetic polymorphisms in drug targets and disease genes. Am J Pharmacogenomics, 2, 197–205.CrossRefGoogle ScholarPubMed
Soldan, K., Barbara, J. A. J., Ramsay, M., et al. (2003) Estimation of the risk of hepatitis B virus, hepatitis C virus and human immunodeficiency virus infectious donations entering the blood supply in England, 1993–2001. Vox Sang, 84, 274–86.CrossRefGoogle Scholar
Striebel, H. M., Birch-Hirschfeld, E., Egerer, R., et al. (2004) Enhancing sensitivity of human herpes virus diagnosis with DNA microarrays using dendrimers. Exp Mol Pathol, 77, 89–97.CrossRefGoogle ScholarPubMed
Varnum, S. M., Woodburry, R. L. and Zangar, R. C. (2004) A protein microarray ELISA for screening biological fluids. Methods Mol Biol, 264, 161–72.Google ScholarPubMed
Vora, G. J., Meador, C. E., Stenger, D. A., et al. (2004) Nucleic acid amplification strategies for DNA microarray-based pathogen detection. Appl Environ Microbiol, 70, 3047–54.CrossRefGoogle ScholarPubMed
Wallace, J., Woda, B. A. and Pihan, G. (2005) Facile, comprehensive, high-throughput genotyping of human genital Papillomaviruses using spectrally addressable liquid bead microarrays. J Mol Diagn, 7, 72–80.CrossRefGoogle ScholarPubMed
Wang, D., Liu, S., Trummer, B.J., et al. (2002) Carbohydrate microarrays for the recognition of cross-reactive molecular markers of microbes and host cells. Nat Biotechnol, 20, 275–81.CrossRefGoogle ScholarPubMed
Weber, B., Gurtler, L., Thorstensson, R., et al. (2002) Multicenter evaluation of a new automated fourth-generation human immunodeficiency virus screening assay with a sensitive antigen detection module and high specificity. J Clin Microbiol, 40, 1938–46.CrossRefGoogle ScholarPubMed
Wildt, R. M. T., Mundy, C. R., Gorick, B. D., et al. (2000) Antibody arrays for high-throughput screening of antigen-antibody interactions. Nat Biotechnol, 18, 989–94.CrossRefGoogle Scholar
Wu, R. Z., Bailey, S. N. and Sabatini, D. M. (2002) Cell-biological applications of transfected-cell microarrays. Trends Cell Biol, 12, 485–8.CrossRefGoogle ScholarPubMed

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×