Aemero, M et al. (2015) Genetic diversity, multiplicity of infection and population structure of Schistosoma mansoni isolates from human hosts in Ethiopia. BMC Genetics 16, 137
Attard, CRM, Beheregaray, LB and Möller, LM (2017) Genotyping-by-sequencing for estimating relatedness in non-model organisms: avoiding the trap of precise bias. Molecular Ecology Resources 12, 381–390.
Berriman, M et al. (2009) The genome of the blood fluke Schistosoma mansoni. Nature 460, 352–358.
Biesecker, LG, Shianna, KV and Mullikin, JC (2011) Exome sequencing: the expert view. Genome Biology 12, 128.
Chevalier, FD et al. (2014) Efficient linkage mapping using exome capture and extreme QTL in schistosome parasites. BMC Genomics 15, 617.
Chevalier, FD et al. (2016) Independent origins of loss-of-function mutations conferring oxamniquine resistance in a Brazilian schistosome population. International Journal for Parasitology 46, 417–424.
Danecek, P et al. (2011) The variant call format and VCF tools. Bioinformatics (Oxford, England) 27, 2156–2158.
DePristo, MA et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nature Genetics 43, 491–498.
Duvaux-Miret, O et al. (1991) Molecular cloning and sequencing of the α-tubulin gene from Schistosoma mansoni. Molecular and Biochemical Parasitology 49, 337–340.
Emery, AM et al. (2012) Schistosomiasis collection at NHM (SCAN). Parasites & Vectors 5, 185.
Ezeamama, AE et al. (2016) Gaining and sustaining schistosomiasis control: study protocol and baseline data prior to different treatment strategies in five African countries. BMC Infectious Diseases 16, 229.
Glenn, TC et al. (2013) Significant variance in genetic diversity among populations of Schistosoma haematobium detected using microsatellite DNA loci from a genome-wide database. Parasites & Vectors 6, 300.
Gower, CM et al. (2007) Development and application of an ethically and epidemiologically advantageous assay for the multi-locus microsatellite analysis of Schistosoma mansoni. Parasitology 134, 523.
Gower, CM et al. (2011) Population genetics of Schistosoma haematobium: development of novel microsatellite markers and their application to schistosomiasis control in Mali. Parasitology 138, 978–994.
Gower, CM et al. (2013) Population genetic structure of Schistosoma mansoni and Schistosoma haematobium from across six sub-Saharan African countries: implications for epidemiology, evolution and control. Acta Tropica 128, 261–274.
Gower, CM et al. (2017) Phenotypic and genotypic monitoring of Schistosoma mansoni in Tanzanian schoolchildren five years into a preventative chemotherapy national control programme. Parasites & Vectors 10, 593.
Harvey, MG et al. (2016) Sequence capture versus restriction site associated DNA sequencing for shallow systematics. Systematic Biology 65, 910–924.
Hotez, PJ et al. (2006) Helminth infections: soil-transmitted helminth infections and Schistosomiasis. In Jamison, DT, Breman, JG, Measham, AR, Alleyne, G, Claeson, M, Evans, DB, Jha, P, Mills, A and Musgrove, P (eds), Disease Control Priorities in Developing Countries. Washington, DC: World Bank, Chapter 24.
Lepesant, JM et al. (2012) Chromatin structure changes around satellite repeats on the Schistosoma mansoni female sex chromosome suggest a possible mechanism for sex chromosome emergence. Genome Biology 13, R14.
Li, H and Durbin, R (2009) Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics (Oxford, England) 25, 1754–1760.
Li, H et al. (2009) The sequence alignment/Map format and SAMtools. Bioinformatics (Oxford, England) 25, 2078–2079.
Li, Y et al. (2017) Genetic diversity and selection of three nuclear genes in Schistosoma japonicum populations. Parasites & Vectors 10, 87.
McKenna, A et al. (2010) The genome analysis toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research 20, 1297–1303.
Pehlivan, D et al. (2014) Whole-exome sequencing links TMCO1 defect syndrome with cerebro-facio-thoracic dysplasia. European Journal of Human Genetics 22, 1145–1148.
Protasio, AV et al. (2012) A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni. PLoS Neglected Tropical Diseases 6, e1455.
Quinlan, AR and Hall, IM (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics (Oxford, England) 26, 841–842.
Rabbani, B, Tekin, M and Mahdieh, N (2014) The promise of whole-exome sequencing in medical genetics. Journal of Human Genetics 59, 5–15.
Shaw, ND et al. (2017) SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome. Nature Genetics 49, 238–248.
Shortt, JA et al. (2017) Whole genome amplification and reduced-representation genome sequencing of Schistosoma japonicum miracidia. PLoS Neglected Tropical Diseases 11, e0005292.
Steinauer, ML, Blouin, MS and Criscione, CD (2010) Applying evolutionary genetics to schistosome epidemiology. Infection, Genetics and Evolution 10, 433–443.
Steinauer, ML et al. (2013) Non-invasive sampling of schistosomes from humans requires correcting for family structure. PLoS Neglected Tropical Diseases 7, e2456.
Taylor, AB et al. (2017) Structural and enzymatic insights into species-specific resistance to schistosome parasite drug therapy. Journal of Biological Chemistry 292, 11154–11164.
Valentim, CLL et al. (2009) Efficient genotyping of Schistosoma mansoni miracidia following whole genome amplification. Molecular and Biochemical Parasitology 166, 81–84.
Van den Broeck, F et al. (2015) Reconstructing colonization dynamics of the human parasite Schistosoma mansoni following anthropogenic environmental changes in Northwest Senegal. PLoS Neglected Tropical Diseases 9, e0003998.
Visser, PS and Pitchford, RJ (1972) A simple apparatus for rapid recovery of helminth eggs from excreta with special reference to Schistosoma mansoni. South African Medical Journal=Suid-Afrikaanse tydskrif vir geneeskunde 46, 1344–1346.
Webster, PJ et al. (1992) A cDNA encoding an α-tubulin from Schistosoma mansoni. Molecular and Biochemical Parasitology 51, 169–170.
Webster, BL et al. (2012) Genetic diversity within Schistosoma haematobium: DNA barcoding reveals two distinct groups. PLoS Neglected Tropical Diseases 6, e1882.
Webster, BL et al. (2013) DNA ‘barcoding’ of Schistosoma mansoni across sub-Saharan Africa supports substantial within locality diversity and geographical separation of genotypes. Acta Tropica 128, 250–260.
Webster, BL et al. (2015) Development of novel multiplex microsatellite polymerase chain reactions to enable high-throughput population genetic studies of Schistosoma haematobium. Parasites & Vectors 8, 432.
Young, ND et al. (2012) Whole-genome sequence of Schistosoma haematobium. Nature Genetics 44, 221–225.
Zhou, Y et al. (2009) The Schistosoma japonicum genome reveals features of host–parasite interplay. Nature 460, 345–351.