Skip to main content Accessibility help
×
Hostname: page-component-848d4c4894-wg55d Total loading time: 0 Render date: 2024-06-06T05:14:23.887Z Has data issue: false hasContentIssue false

34 - The role of miRNA in hematopoiesis

from VI - MicroRNAs in stem cell development

Published online by Cambridge University Press:  22 August 2009

Michaela Scherr
Affiliation:
Hanover Medical School Center for Internal Medicine Department of Hematology and Oncology Carl-Neuberg Strasse 1 D-30623, Hanover Germany
Matthias Eder
Affiliation:
Hanover Medical School Center for Internal Medicine Department of Hematology and Oncology Carl-Neuberg Strasse 1 D-30623 Hanover Germany
Get access

Summary

Introduction

RNA interference (RNAi) represents a highly conserved cellular mechanism to specifically regulate eukaryotic gene expression either by inducing sequence- specific degradation of complementary mRNA or by inhibiting its translation (reviewed in Hannon, 2002; Hutvagner & Zamore, 2002). RNAi is triggered by two classes of small RNAs: one class, called siRNA (small interfering RNA), can be derived from longer double-stranded RNAs that are transcribed from different kinds of vector or introduced directly into cells by transfection, whereas the second class, miRNA (microRNA), is processed from stem-loop precursors that are encoded within the host genome (Elbashir et al., 2001; Ambros et al., 2003).

Non-coding miRNAs negatively regulate the expression of genes at the post-transcriptional level through the RNAi pathway (Bartel, 2004). The first miRNA, lin-4, was discovered in 1993 by Ambros and colleagues (Lee et al., 1993) in a study of developmental timing in the nematode worm C. elegans and soon led to the identification of the first miRNA target lin-14 (Wightman et al., 1993). The second miRNA discovered, let-7, is involved in regulation of intracellular signal transduction and has recently been shown to inhibit expression of let-60, the nematode RAS homolog (Johnson et al., 2005). Hundreds of miRNAs have been identified in flies, worms, plants, fish, and mammals by cloning of size-fractionated RNAs or bioinformatic prediction strategies (Lagos-Quintana et al., 2001; Llave et al., 2002; Lim et al., 2003a, 2003b; Watanabe et al., 2005).

Type
Chapter
Information
MicroRNAs
From Basic Science to Disease Biology
, pp. 467 - 475
Publisher: Cambridge University Press
Print publication year: 2007

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Ambros, V., Bartel, B., Bartel, D. P.et al. (2003). A uniform system for microRNA annotation. RNA, 9, 277–279.Google Scholar
Bartel, D. P. (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell, 116, 281–297.Google Scholar
Bohnsack, M. T., Czaplinski, K. and Gorlich, D. (2004). Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA, 10, 185–191.Google Scholar
Brennecke, J., Hipfner, D. R., Stark, A., Russell, R. B. and Cohen, S. M. (2003). Bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila. Cell, 113, 25–36.Google Scholar
Cai, X., Hagedorn, C. H. and Cullen, B. R. (2004). Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA, 10, 1957–1966.Google Scholar
Cai, X., Lu, S., Zhang, Z.et al. (2005). Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells. Proceedings of the National Academy of Sciences USA, 102, 5570–5575.Google Scholar
Calin, G. A., Dumitru, C. D., Shumizu, M.et al. (2002). Frequent deletions and down-regulation of micro-RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences USA, 99, 15 524–15 529.Google Scholar
Calin, G. A., Liu, C. G., Sevignani, C.et al. (2004a). A microRNA profiling reveals distinct signatures in B cell chronic lymphocytic leukemias. Proceedings of the National Academy of Sciences USA, 101, 11 755–11 760.Google Scholar
Calin, G. A., Sevignani, C., Dunitru, C. D.et al. (2004b). Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. Proceedings of the National Academy of Sciences USA, 101, 2999–3004.Google Scholar
Calin, G. A., Ferracin, M., Cimmino, A.et al. (2005). A microRNA signature associated with prognosis and progression in chronic lymphocytic leukemia. New England Journal of Medicine, 353, 1793–1801.Google Scholar
Chen, C. Z., Li, L., Lodish, H. F. and Bartel, D. P. (2004). MicroRNAs modulate hematopoietic lineage differentiation. Science, 303, 83–86.Google Scholar
Cimmino, A., Calin, G. A., Fabbri, M.et al. (2005). miR-15 and miR-16 induce apoptosis by targeting BCL2. Proceedings of the National Academy of Sciences USA, 102, 13 944–13 949.Google Scholar
Denli, A. M., Tops, B. B., Plasterk, R. H., Ketting, R. F. and Hannon, G. J. (2004). Processing of primary microRNAs by the Microprocessor complex. Nature, 432, 231–235.Google Scholar
Du, T. and Zamore, P. D. (2005). microPrimer: the biogenesis and function of microRNA. Development, 132, 4645–4652.Google Scholar
Eis, P. S., Tam, W., Sun, L.et al. (2005). Accumulation of miR-155 and BIC RNA in human B cell lymphomas. Proceedings of the National Academy of Sciences USA, 102, 3627–3632.Google Scholar
Elbashir, S. M., Lendeckel, W. and Tuschl, T. (2001). RNA interference is mediated by 21- and 22-nucleotide RNAs. Genes & Development, 15, 188–200.Google Scholar
Fazi, F., Rosa, A., Fatica, A.et al. (2005). A minicircuitry comprised of microRNA-223 and transcription factors NFI-A and C/EBPalpha regulates human granulopoiesis. Cell, 123, 819–831.Google Scholar
Han, J., Lee, Y., Yeom, K. H.et al. (2004). The Drosha-DGCR8 complex in primary microRNA processing. Genes & Development, 18, 3016–3027.Google Scholar
Hannon, G. J. (2002). RNA interference. Nature, 418, 244–251.Google Scholar
Hatfield, S., Shcherbata, H. R., Fischer, K. A.et al. (2005). Stem cell division is regulated by the microRNA pathway. Nature, 435, 974–978.Google Scholar
He, L., Thomson, J. M., Hemann, M. T.et al. (2005). A microRNA polycistron as a potential human oncogene. Nature, 435, 828–833.Google Scholar
Houbaviy, H. B., Murray, M. F. and Sharp, P. A. (2003). Embryonic stem cell-specific microRNAs. Developmental Cell, 5, 351–358.Google Scholar
Hutvagner, G. and Zamore, P. D. (2002). A microRNA in a multiple-turnover RNAi enzyme complex. Science, 297, 2056–2060.Google Scholar
Johnson, S. M., Grosshans, H., Shingara, J.et al. (2005). RAS is regulated by the let-7 microRNA family. Cell, 120, 635–647.Google Scholar
Jopling, C. L., Yi, M., Lancaster, A. M., Lemon, S. M. and Sarnow, P. (2005). Modulation of hepatitis C virus RNA abundance by a liver-specific microRNA. Science, 309, 1577–1581.Google Scholar
Krek, A., Grün, D., Poly, M. N.et al. (2005). Combinatorial microRNA target predictions. Nature Genetics, 37, 495–500.Google Scholar
Lagos-Quintana, M., Rauhut, R., Lendeckel, W. and Tuschl, T. (2001). Identification of novel genes coding for small expressed RNAs. Science, 294, 853–858.Google Scholar
Lee, R. C., Feinbaum, R. L. and Ambros, V. (1993). The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 75, 843–854.Google Scholar
Lee, Y., Ahn, C., Han, J.et al. (2003). The nuclear RNase III Drosha initiates microRNA processing. Nature, 425, 415–419.Google Scholar
Lee, Y., Kim, M., Han, J.et al. (2004). MicroRNA genes are transcribed by RNA polymerase II. European Molecular Biology Organization Journal, 23, 4051–4060.Google Scholar
Lewis, B. P., Burge, C. B. and Bartel, D. P. (2005). Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell, 120, 15–20.Google Scholar
Lim, L. P., Lau, N. C., Weinstein, E. G.et al. (2003a). The microRNAs of Caenorhabditis elegans. Genes & Development, 17, 991–1008.Google Scholar
Lim, L. P., Glasner, M. E., Yekta, S., Burge, C. B. and Bartel, D. P. (2003b). Vertebrate microRNA genes. Science, 299, 1540.Google Scholar
Llave, C., Xie, Z., Kasschau, K. D. and Carrington, J. C. (2002). Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science, 297, 2053–2056.Google Scholar
Lu, J., Getz, G., Miska, E. A.et al. (2005). MicroRNA expression profiles classify human cancers. Nature, 435, 834–838.Google Scholar
McManus, M. T. (2003). MicroRNAs and cancer. Seminars in Cancer Biology, 13, 253–258.Google Scholar
Metzler, M., Wilda, M., Busch, K., Viehmann, S. and Borkhardt, A. (2004). High expression of precursor microRNA-155/BIC RNA in children with Burkitt lymphoma. Genes, Chromosomes & Cancer, 39, 167–169.Google Scholar
O'Donnell, K. A., Wentzel, E. A., Zeller, K. I., Dang, C. V. and Mendell, J. T. (2005). c-Myc-regulated microRNAs modulate E2F1 expression. Nature, 435, 839–843.Google Scholar
Pfeffer, S., Zavolan, M., Grasser, F. A.et al. (2004). Identification of virus-encoded microRNAs. Science, 304, 734–736.Google Scholar
Rodriguez, A., Griffiths-Jones, S., Ashurst, J. L. and Bradley, A. (2004). Identification of mammalian microRNA host genes and transcription units. Genome Research, 14, 1902–1910.Google Scholar
Suh, M. R., Lee, Y., Kim, J. Y.et al. (2004). Human embryonic stem cells express a unique set of microRNAs. Developmental Biology, 270, 488–498.Google Scholar
Tam, W., Hughes, S. H., Hayward, W. S. and Besmer, P. (2002). Avian bic, a gene isolated from a common retroviral site in avian leukosis virus-induced lymphomas that encodes a noncoding RNA, cooperates with c-myc in lymphomagenesis and erythroleukemogenesis. Journal of Virology, 76, 4275–4286.Google Scholar
Tenen, D. G. (2003). Disruption of differentiation in human cancer: AML shows the way. Nature Reviews Cancer, 3, 89–101.Google Scholar
Berg, A., Kroesen, B. J., Kooista, K.et al. (2003). High expression of B-cell receptor inducible gene BIC in all subtypes of Hodgkin lymphoma. Genes, Chromosomes & Cancer, 37, 20–28.Google Scholar
Wightman, B., Ha, I. and Ruvkun, G. (1993). Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell, 75, 855–862.Google Scholar
Watanabe, Y., Yachie, N., Numata, K.et al. (2005). Computational analysis of microRNA targets in Caenorhabditis elegans. Gene (Epub ahead of print).Google Scholar
Xie, H., Ye, M., Feng, R. and Graf, T. (2004). Stepwise reprogramming of B cells into macrophages. Cell, 117, 663–676.Google Scholar
Xie, X., Lu, J., Kulbokas, E. J.et al. (2005). Systematic discovery of regulatory motifs in human promoters and 3′ UTRs by comparison of several mammals. Nature, 243, 338–345.Google Scholar
Xu, P., Vernooy, S. Y., Guo, M. and Hay, B. A. (2003). The Drosophila microRNA Mir-14 suppresses cell death and is required for normal fat metabolism. Current Biology, 13, 790–795.Google Scholar
Yekta, S., Shih, I. H. and Bartel, D. P. (2004). MicroRNA-directed cleavage of HOXB8 mRNA. Science, 304, 594–596.Google Scholar
Yi, R., Qin, Y., Macara, I. G. and Cullen, B. R. (2003). Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes & Development, 17, 3011–3016.Google Scholar
Zhang, H., Kolb, F. A., Jaskiewicz, L., Westhof, E. and Filipowicz, W. (2004). Single processing center models for human Dicer and bacterial RNase III. Cell, 118, 57–68.Google Scholar

Save book to Kindle

To save this book to your Kindle, first ensure coreplatform@cambridge.org is added to your Approved Personal Document E-mail List under your Personal Document Settings on the Manage Your Content and Devices page of your Amazon account. Then enter the ‘name’ part of your Kindle email address below. Find out more about saving to your Kindle.

Note you can select to save to either the @free.kindle.com or @kindle.com variations. ‘@free.kindle.com’ emails are free but can only be saved to your device when it is connected to wi-fi. ‘@kindle.com’ emails can be delivered even when you are not connected to wi-fi, but note that service fees apply.

Find out more about the Kindle Personal Document Service.

Available formats
×

Save book to Dropbox

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Dropbox.

Available formats
×

Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

Available formats
×