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  • Print publication year: 2012
  • Online publication date: August 2012

5 - Chemical reporters of protein methylation and acetylation

from Part I - Basics of chromatin biology and biochemistry
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Epigenomics
  • Online ISBN: 9780511777271
  • Book DOI: https://doi.org/10.1017/CBO9780511777271
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References

Allfrey, V. G., Faulkner, R., and Mirsky, A. E. (1964). Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proceedings of the National Academy of Sciences USA, 51, 786–794.
An, W. and Roeder, R. (2002). Direct association of p300 with unmodified H3 and H4 N-termini modulates p300-dependent acetylation and transcription of nucleosomal templates. Journal of Biological Chemistry, 278, 1504–1510.
Bolden, J. E., Peart, M. J., and Johnstone, R. W. (2006). Anticancer activities of histone deacetylase inhibitors. Nature Reviews Drug Discovery, 5, 769–784.
Chen, D. (2004). Effects of adenosine dialdehyde treatment on in vitro and in vivo stable protein methylation in HeLa cells. Journal of Biochemistry, 136, 371–376.
Choudhary, C., Kumar, C., Gnad, F., et al. (2009). Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science, 325, 834–840.
Dalhoff, C., Lukinavičius, G., Klimašauskas, S., and Weinhold, E. (2005). Direct transfer of extended groups from synthetic cofactors by DNA methyltransferases. Nature Chemical Biology, 2, 31–32.
Dalhoff, C., Lukinavičius, G., Klimašauskas, S., and Weinhold, E. (2006). Synthesis of S-adenosyl-l-methionine analogs and their use for sequence-specific transalkylation of DNA by methyltransferases. Nature Protocols, 1, 1879–1886.
Dillon, S. C., Zhang, X., Trievel, R. C., and Cheng, X. (2005). The SET-domain protein superfamily: protein lysine methyltransferases. Genome Biology, 6, 227.
Grammel, M., Zhang, M. M., and Hang, H. C. (2010). Orthogonal alkynyl amino acid reporter for selective labeling of bacterial proteomes during infection. Angewandte Chemie (International Edition), 49, 5970–5974.
Ivanov, S. S., Charron, G., Hang, H. C., and Roy, C. R. (2010). Lipidation by the host prenyltransferase machinery facilitates membrane localization of Legionella pneumophila effector proteins. Journal of Biological Chemistry, 285, 34 686–34 698.
Kouzarides, T. (2007). Chromatin modifications and their function. Cell, 128, 693–705.
Mann, M. and Jensen, O. N. (2003). Proteomic analysis of posttranslational modifications. Nature Biotechnology, 21, 255–261.
Marcu, M. G., Jung, Y., Lee, S., et al. (2006). Curcumin is an inhibitor of p300 histone acetyltransferase. Medicinal Chemistry (Shāriqah [United Arab Emirates]), 2, 169–174.
McMillan, J. M., Walle, U. K., and Walle, T. (2005). S-adenosyl-l-methionine: transcellular transport and uptake by Caco-2 cells and hepatocytes. Journal of Pharmacy and Pharmacology, 57, 599–605.
Park, P. J. (2009). ChIP-seq: advantages and challenges of a maturing technology. Nature Reviews Genetics, 10, 669–680.
Peters, W., Willnow, S., Duisken, M., et al. (2010). Enzymatic site-specific functionalization of protein methyltransferase substrates with alkynes for click labeling. Angewandte Chemie (International Edition), 49, 5170–5173.
Prescher, J. A. and Bertozzi, C. R. (2005). Chemistry in living systems. Nature Chemical Biology, 1, 13–21.
Rangan, K. J., Yang, Y., Charron, G., and Hang, H. C. (2010). Rapid visualization and large-scale profiling of bacterial lipoproteins with chemical reporters. Journal of the American Chemical Society, 132, 10 628–10 629.
Richon, V. M., Emiliani, S., Verdin, E., et al. (1998). A class of hybrid polar inducers of transformed cell differentiation inhibits histone deacetylases. Proceedings of the National Academy of Sciences USA, 95, 3003–3007.
Ruthenburg, A. J., Li, H., Patel, D. J., and Allis, C. D. (2007). Multivalent engagement of chromatin modifications by linked binding modules. Nature Reviews Molecular Cell Biology, 8, 983–994.
Sanchez, R. and Zhou, M. M. (2009). The role of human bromodomains in chromatin biology and gene transcription. Current Opinion in Drug Discovery and Development, 12, 659.
Shi, Y. (2007). Histone lysine demethylases: emerging roles in development, physiology and disease. Nature Reviews Genetics, 8, 829–833.
Shogren-Knaak, M. A., Alaimo, P. J., and Shokat, K. M. (2001). Recent advances in chemical approaches to the study of biological systems. Annual Review of Cell and Developmental Biology, 17, 405–433.
Sletten, E. and Bertozzi, C. (2009). Bioorthogonal chemistry: fishing for selectivity in a sea of functionality. Angewandte Chemie (International Edition), 48, 6974–6998.
Spannhoff, A., Hauser, A., Heinke, R., Sippl, W., and Jung, M. (2009). The emerging therapeutic potential of histone methyltransferase and demethylase inhibitors. ChemMedChem, 4, 1568–1582.
Strahl, B. D. and Allis, C. D. (2000). The language of covalent histone modifications. Nature, 403, 41–45.
van Swieten, P. F., Leeuwenburgh, M. A., Kessler, B. M., and Overkleeft, H. S. (2005). Bioorthogonal organic chemistry in living cells: novel strategies for labeling biomolecules. Organic and Biomolecular Chemistry, 3, 20–27.
Thompson, P. R., Kurooka, H., Nakatani, Y., and Cole, P. A. (2001). Transcriptional coactivator protein p300: kinetic characterization of its histone acetyltransferase activity. Journal of Biological Chemistry, 276, 33 721–33 729.
Wang, Q., Zhang, Y., Yang, C., et al. (2010). Acetylation of metabolic enzymes coordinates carbon source utilization and metabolic flux. Science, 327, 1004–1007.
Yang, Y., Ascano, J. M., and Hang, H. C. (2010). Bioorthogonal chemical reporters for monitoring protein acetylation. Journal of the American Chemical Society, 132, 3640–3641.
Yount, J. S., Moltedo, B., Yang, Y., et al. (2010). Palmitoylome profiling reveals S-palmitoylation-dependent antiviral activity of IFITM3. Nature Chemical Biology, 6, 610–614.
Yu, M., de Carvalho, L. P. S., Sun, G., and Blanchard, J. S. (2006). Activity-based substrate profiling for Gcn5-related N-acetyltransferases: the use of chloroacetyl-coenzyme A to identify protein substrates. Journal of the American Chemical Society, 128, 15 356–15 357.
Zhao, S., Xu, W., Jiang, W., et al. (2010). Regulation of cellular metabolism by protein lysine acetylation. Science, 327, 1000–1004.