Anonymous 1988. Arrêté du 19 avril 1988 fixant les conditions d’attribution de l’autorisation d’expérimenter. Journal Officiel de la République Française, pp. 5608–5610.
Bauchop, T, Clarke, RT, Newhook, JC 1975. Scanning electron microscope study of bacteria associated with the rumen epithelium of sheep. Applied Microbiology 30, 668–675.
Bell, T, Newman, JA, Silverman, BW, Turner, SL, Lilley, AK 2005. The contribution of species richness and composition to bacterial services. Nature 436, 1157–1160.
Cardinale, BJ, Palmer, MA, Collins, SL 2002. Species diversity enhances ecosystem functioning through interspecific facilitation. Nature 415, 426–429.
Cheng, KJ, Costerton, JW 1986. Microbial adhesion and colonization within the digestive tract. Society for Applied Bacteriology Symposium Series 13, 239–261.
Cheng, KJ, McAllister, TA 1997. The rumen microbial ecosystem. In Compartimentation in the rumen (ed. CS Stewart), pp. 492–522. Blackie Academic and Professional, London.
Cheng, KJ, McCowan, RP, Costerton, JW 1979. Adherent epithelial bacteria in ruminants and their roles in digestive tract function. The American Journal of Clinical Nutrition 32, 139–148.
Cho, SJ, Cho, KM, Shin, EC, Lim, WJ, Hong, SY, Choi, BR, Kang, JM, Lee, SM, Kim, YH, Kim, H, Yun, HD 2006. 16S rDNA analysis of bacterial diversity in three fractions of cow rumen. Journal of Microbiology and Biotechnology 16, 92–101.
Czerkawski, DE 1986. Control of digestion and metabolism in ruminants. In Degradation of solid feeds in the rumen: spatial distribution of microbial activity and its consequences (ed. A Dobson), pp. 158–172. Prentice-Hall, Englewood Cliffs, NJ.
Dehority, BA, Grubb, JA 1981. Bacterial population adherent to the epithelium on the roof of the dorsal rumen of sheep. Applied and Environmental Microbiology 41, 1424–1427.
Edwards, JE, Bequette, BJ, McKain, N, McEwan, NR, Wallace, RJ 2005. Influence of flavomycin on microbial numbers, microbial metabolism and gut tissue protein turnover in the digestive tract of sheep. The British Journal of Nutrition 94, 64–70.
Friswell, M, Gilbert, P, Allison, D, Stratford, I, Telfer, B, Mcbain, A 2006. Murine gut microbiome: nature and nurture. Reproduction, Nutrition, Development 46, S1–S138, S6.
Fromin, N, Hamelin, J, Tarnawski, S, Roesti, D, Jourdain-Miserez, K, Forestier, N, Teyssier-Cuvelle, S, Gillet, F, Aragno, M, Rossi, P 2002. Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environmental Microbiology 4, 634–643.
Horner-Devine, MC, Lage, M, Hughes, JB, Bohannan, BJ 2004. A taxa–area relationship for bacteria. Nature 432, 750–753.
Janse, I, Bok, J, Zwart, G 2004. A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis. Journal of Microbiological Methods 57, 279–281.
Kropf, S, Heuer, H, Gruning, M, Smalla, K 2004. Significance test for comparing complex microbial community fingerprints using pairwise similarity measures. Journal of Microbiological Methods 57, 187–195.
Larue, R, Yu, ZT, Parisi, VA, Egan, AR, Morrison, M 2005. Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing. Environmental Microbiology 7, 530–543.
Loisel, P, Harmand, J, Zemb, O, Latrille, E, Lobry, C, Delgenes, JP, Godon, JJ 2006. Denaturing gradient electrophoresis (DGE) and singlestrand conformation polymorphism (SSCP) molecular fingerprintings revisited by simulation and used as a tool to measure microbial diversity. Environmental Microbiology 8, 720–731.
Martin, C, Fonty, G, Michalet-Doreau, B 2002. Factors affecting the fibrolytic activity of the digestive microbial ecosystems in ruminants. In Gastrointestinal microbiology in animals (ed. SA Martin), pp. 1–17. Research Signpost, Trivandrum, Kerala, India.
McCowan, RP, Cheng, KJ, Costerton, JW 1980. Adherent bacterial populations on the bovine rumen wall: distribution patterns of adherent bacteria. Applied and Environmental Microbiology 39, 233–241.
Mead, LJ, Jones, GA 1981. Isolation and presumptive identification of adherent epithelial bacteria (“epimural” bacteria) from the ovine rumen wall. Applied and Environmental Microbiology 41, 1020–1028.
Michalet-Doreau, B, Fernandez, I, Peyron, C, Millet, L, Fonty, G 2001. Fibrolytic activities and cellulolytic bacterial community structure in the solid and liquid phases of rumen contents. Reproduction Nutrition Development 41, 187–194.
Mitsumori, M, Ajisaka, N, Tajima, K, Kajikawa, H, Kurihara, M 2002. Detection of Proteobacteria from the rumen by PCR using methanotroph-specific primers. Letters in Applied Microbiology 35, 251–255.
Muyzer, G, De Waal, EC, Uitterlinden, AG 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology 59, 695–700.
Odum, EP 1971. Fundamentals of ecology. WB Saunders Company, Philadelphia, USA.
Pace, NR 1997. A molecular view of microbial diversity and the biosphere. Science 276, 734–740.
Pedros-Alio, C 2006. Marine microbial diversity: can it be determined? Trends in Microbiology 14, 257–263.
Roussel, Y, Wilks, M, Harris, A, Mein, C, Tabaqchali, S 2005. Evaluation of DNA extraction methods from mouse stomachs for the quantification of H. pylori by real-time PCR. Journal of Microbiological Methods 62, 71–81.
Savelkoul, P, Aarts, H, de Haas, J, Dijkshoorn, L, Duim, B, Otsen, M, Rademaker, J, Schouls, L, Lenstra, J 1999. Amplified-fragment length polymorphism analysis: the state of an art. Journal of Clinical Microbiology 37, 3083–3091.
Stahl, DA, Flesher, B, Mansfield, HR, Montgomery, L 1988. Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Applied and Environmental Microbiology 54, 1079–1084.
Statistical Analysis Systems Institute 1999. SAS version 8. SAS Institute Inc., Cary, USA.
Wallace, RJ, Cheng, KJ, Dinsdale, D, Ørskov, ER 1979. An independent microbial flora of the epithelium and its role in the ecomicrobiology of the rumen. Nature 279, 424–426.
Yu, Z, Morrison, M 2004. Improved extraction of PCR-quality community DNA from digesta and fecal samples. Biotechniques 36, 808–812.