Mazumder, G.A. Uddin, A. and Chakraborty, S. 2017. Expression levels and codon usage patterns in nuclear genes of the filarial nematode Wucheraria bancrofti and the blood fluke Schistosoma haematobium. Journal of Helminthology, Vol. 91, Issue. 01, p. 72.
Uddin, Arif and Chakraborty, Supriyo 2016. Codon usage trend in mitochondrial CYB gene. Gene, Vol. 586, Issue. 1, p. 105.
Zhao, Yongchao Zheng, Hao Xu, Anying Yan, Donghua Jiang, Zijian Qi, Qi and Sun, Jingchen 2016. Analysis of codon usage bias of envelope glycoprotein genes in nuclear polyhedrosis virus (NPV) and its relation to evolution. BMC Genomics, Vol. 17, Issue. 1,
Jia, Xian Liu, Shuyu Zheng, Hao Li, Bo Qi, Qi Wei, Lei Zhao, Taiyi He, Jian and Sun, Jingchen 2015. Non-uniqueness of factors constraint on the codon usage in Bombyx mori. BMC Genomics, Vol. 16, Issue. 1,
Raiford, Douglas W. Heizer, Esley M. Miller, Robert V. Doom, Travis E. Raymer, Michael L. and Krane, Dan E. 2012. Metabolic and Translational Efficiency in Microbial Organisms. Journal of Molecular Evolution, Vol. 74, Issue. 3-4, p. 206.
Iriarte, Andrés Baraibar, Juan Diego Romero, Héctor and Musto, Héctor 2011. Selected codon usage bias in members of the class Mollicutes. Gene, Vol. 473, Issue. 2, p. 110.
Shah, P. and Gilchrist, M. A. 2011. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift. Proceedings of the National Academy of Sciences, Vol. 108, Issue. 25, p. 10231.
Swire, Jonathan 2007. Selection on Synthesis Cost Affects Interprotein Amino Acid Usage in All Three Domains of Life. Journal of Molecular Evolution, Vol. 64, Issue. 5, p. 558.
Das, Sabyasachi Paul, Sandip and Dutta, Chitra 2006. Evolutionary Constraints on Codon and Amino Acid Usage in Two Strains of Human Pathogenic Actinobacteria Tropheryma whipplei. Journal of Molecular Evolution, Vol. 62, Issue. 5, p. 645.
Chanda, Ipsita Pan, Archana and Dutta, Chitra 2005. Proteome Composition in Plasmodium falciparum: Higher Usage of GC-Rich Nonsynonymous Codons in Highly Expressed Genes. Journal of Molecular Evolution, Vol. 61, Issue. 4, p. 513.
Jana, S. and Deb, J. K. 2005. RETRACTED ARTICLE: Strategies for efficient production of heterologous proteins in Escherichia coli. Applied Microbiology and Biotechnology, Vol. 67, Issue. 3, p. 289.
The usage of alternative synonymous codons in the completely sequenced, extremely A+T-rich parasite Plasmodium falciparum was studied. Confirming previous studies obtained with less than 3% of the total genes recently described, we found that A- and U-ending triplets predominate but translational selection increases the frequency of a subset of codons in highly expressed genes. However, some new results come from the analysis of the complete sequence. First, there is more variation in GC3 than previously described; second, the effect of natural selection acting at the level of translation has been analysed with real expression data at 4 different stages and third, we found that highly expressed proteins increment the frequency of energetically less expensive amino acids. The implications of these results are discussed.
This list contains references from the content that can be linked to their source. For a full set of references and notes please see the PDF or HTML where available.
Email your librarian or administrator to recommend adding this journal to your organisation's collection.