Al-Ahmad, H, Gressel, J (2006) Mitigation using a tandem construct containing a selectively unfit gene precludes establishment ofBrassica napus transgenes in hybrids and backcrosses with weedy Brassica rapa
. Plant Biotechnol J.
Borba, TDO, Brondani, R, Rangel, P, Brondani, C (2009) Microsatellite marker-mediated analysis of the EMBRAPA rice core collection genetic diversity. Genetica.
Botstein, D, White, RL, Skolnick, M, Davis, RW (1980) Construction of a genetic-linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet.
Burgos, NR, Norsworthy, JK, Scott, RC, Smith, KL (2008) Red rice (Oryza sativa) status after 5 years of imidazolinone-resistant rice technology in Arkansas. Weed Technol.
Busconi, M, Rossi, D, Lorenzoni, C, Baldi, G, Fogher, C (2012) Spread of herbicide-resistant weedy rice (red rice, Oryza sativa L.) after 5 years of Clearfield rice cultivation in Italy. Plant Biol.
Cao, Q, Lu, BR, Xia, H, Rong, J, Sala, F, Spada, A, Grassi, F (2006) Genetic diversity and origin of weedy rice (Oryza sativa f. spontanea) populations found in north-eastern China revealed by simple sequence repeat (SSR) markers. Ann Bot.
Cao, Q-J, Xia, H, Yang, X, Lu, BR (2009) Performance of hybrids between weedy rice and insect-resistant transgenic rice under field experiments: implication for environmental biosafety assessment. J Integr Plant Biol.
Chung, JW, Park, YJ (2010) Population structure analysis reveals the maintenance of isolated sub-populations of weedy rice. Weed Res.
Courtois, B, Froulin, J, Greco, R, Brusch, G, Droc, G, Hamelin, C, Ruiz, M, Clément, G, Evrard, JC, Coppenol, S, Katsantonis, D, Oliveira, M, Negrão, S, Matos, C, Cavigiolo, S, Lupotto, E, Piffanelli, Ahmadia, N (2012) Genetic diversity and population structure in a European collection of rice. Crop Sci.
Delouche, JC, Burgos, NR, Gealy, DR, Martin, GZS, Labrada, R, Larinde, M, Rosell, C (2007) Weedy Rices—Origin, Biology, Ecology, and Control. Rome
Food and Agriculture Organization. 155 p
Doyle, JJ, Doyle, JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull.
Ellstrand, NC (2009) Evolution of invasiveness in plants following hybridization. Biol Invasions.
Evanno, G, Regnaut, S, Goudet, J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol.
Garris, AJ, Tai, TH, Coburn, J, Kresovich, S, McCouch, S (2005) Genetic structure and diversity in Oryza sativa L. Genetics.
Gealy, DR, Agrama, HA, Eizenga, GC (2009) Exploring genetic and spatial structure of US weedy red rice (Oryza sativa) in relation to rice relatives worldwide. Weed Sci.
Gealy, DH, Agrama, H, Jia, MH (2012) Genetic analysis of a typical U.S. red rice phenotypes: indications of prior gene flow in rice fields?
Gealy, DR, Mitten, DH, Rutger, JN (2003) Gene flow between red rice (Oryza sativa) and herbicide-resistant rice (O. sativa): implications for weed management. Weed Technol.
Goulart, ICGR, Matzenbacher, FO, Merotto, A Jr. (2012a) Differential germination pattern of rice cultivars resistant to imidazolinone herbicides carrying different acetolactate synthase gene mutations. Weed Res.
Goulart, ICGR, Pacheco, M, Nunes, A, Merotto, A Jr. (2012b) Identification of origin and analysis of population structure of field-selected imidazolinone-herbicide resistant red rice. Euphytica.
Gressel, J, Valverde, BE (2009) A strategy to provide long-term control of weedy rice while mitigating herbicide resistance transgene flow, and its potential use for other crops with related weeds. Pest Manag Sci.
Hu, T, Qv, X, Xiao, G, Huang, X (2009) Enhanced tolerance to herbicide of rice plants by over-expression of a glutathione S-transferase. Mol Breed.
Ishikawa, R, Toki, N, Imai, K, Sato, HI, Yamagishi, H, Shimamoto, Y, Ueno, K, Morishima, H, Sato, T (2005) Origin of weedy rice grown in Bhutan and the force of genetic diversity. Genet Resour Crop Evol.
Jiang, ZX, Xia, HB, Basso, B, Lu, BR (2012) Introgression from cultivated rice influences genetic differentiation of weedy rice populations at a local spatial scale. Theor ApplGenet.
Jung, HI, Kuk, YI, Back, K, Lee, DJ, Lee, S, Burgos, NR (2010) Resistance levels and fitness of protoporphyrinogen oxidase (PROTOX) inhibitor-resistant transgenic rice in paddy fields. Field Crops Res.
Karasawa, MMG, Vencovsky, R, Silva, CM, Zucchi, MI, Oliveira, GCX, Veasey, EA (2007) Genetic structure of Brazilian wild rice (Oryza glumaepatula Steud., Poaceae) populations analyzed using microsatellite markers. Genet Mol Biol.
Kawasaki, A, Imai, K, Ushiki, J, Ishii, T, Ishikawa, R (2009) Molecular constitution of weedy rice (Oryza sativa L.) found in Okayama prefecture, Japan. Breed Sci.
Kuk, YI, Burgos, NR, Shivrain, VK (2008) Natural tolerance to imazethapyr in red rice (Oryza sativa). Weed Sci.
Lentini, Z, Espinoza, AM (2005) Coexistence of weedy rice and rice in tropical america—gene flow and genetic diversity. Pages 305–322
Gressel, J, ed. Crop Ferality and Volunteerism. Boca Raton, FL
Lin, C, Fang, J, Xu, W, Zhao, T, Cheng, J, Tu, J, Ye, G, Shen, Z (2008) A built-in strategy for containment of transgenic plants: creation of selectively terminable transgenic rice. PLoS ONE.
Liu, K, Muse, SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics.
Livore, AB, Prina, AR, Birk, I, Singh, B, inventors; Instituto Nacional de Technologia Agropecuaria assignee (2005) March 10. Rice plants having increased tolerance to imidazolinone herbicides. U.S. patent 20070028318
Londo, JP, Schaal, BA (2007) Origins and population genetics of weedy red rice in the USA. Mol Ecol.
Mantel, N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res.
Marchezan, E, Menezes, NLD, Siqueira, CDA (2001) Controle da qualidade das sementes de arroz irrigado utilizadas em Santa Maria/RS. Ciência Rural.
Menezes, VG, Mariot, CHP, Kalsing, A, Goulart, ICGR (2009) Arroz-vermelho (Oryza sativa) resistente aos herbicidas imidazolinonas. Planta Daninha.
Merotto, A Jr., Kalsing, A, Lopes, SIG (2013) Development of rice cultivars related to the technologies applied to the red rice control—public institutions—Brazil. CD. Proceedings of the II Latin-American Symposium of Red Rice. Porto Alegre, RS, Brazil
Institute Riograndense of Rice and Federal University of Rio Grande do Sul
Michiels, F, Johnson, K, inventors; Plant Genetic Systems, N.V. (Gent, BE) assignee (2001) January 25. Glufosinate tolerant rice. U.S. patent 6333449
Nei, M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics.
Nei, M, Tajima, F, Tateno, Y (1983) Accuracy of estimated phylogenetic trees from molecular data. J Mol Evol.
Peakall, ROD, Smouse, PE (2006) Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes.
Prathepha, P (2011) Microsatellite analysis of weedy rice (Oryza sativa f. spontanea) from Thailand and Lao PDR. Aust J Crop Sci.
Pritchard, JK, Stephens, M, Donnelly, P (2000) Inference of population structure using multilocus genotype data. Genetics.
Rajguru, SN, Burgos, NR, Shivrain, VK, McD Stewart, J (2005) Mutations in the red rice ALS gene associated with resistance to imazethapyr. Weed Sci.
Reagon, M, Thurber, CS, Gros, BL, Olsen, KM, Jia, Y, Caicedo, AL (2010) Genomic patterns of nucleotide diversity in divergent populations of U.S. weedy rice. BMC Evol Biol.
Roso, AC, Merotto, A Jr., Delatorre, CA, Menezes, VG (2010) Regional scale distribution of imidazolinone herbicide-resistant alleles in red rice (Oryza sativa L.) determined through SNP markers. Field Crops Res.
Scarabel, L, Cenghialta, C, Manuello, D, Sattin, M (2012) monitoring and management of imidazolinone-resistant red rice (Oryza sativa L., var. sylvatica) in Clearfield® Italian paddy rice. Agronomy.
Shivrain, VK, Burgos, NR, Agrama, HA, Lawton-Rauh, A, Lu, BR, Sales, MA, Boyett, V, Gealy, DR, Moldenhauer, KAK (2010a) Genetic diversity of weedy red rice (Oryza sativa) in Arkansas, USA. Weed Res.
Shivrain, VK, Burgos, NR, Sales, MA, Kuk, YI (2010b) Polymorphisms in the ALS gene of weedy rice (Oryza sativa L.) accessions with differential tolerance to imazethapyr. Crop Prot.
Song, X, Liu, L, Wang, Z, Qiang, S (2009) Potential gene flow from transgenic rice (Oryza sativa L.) to different weedy rice (Oryza sativa f. spontanea) accessions based on reproductive compatibility. Pest Manag Sci.
Song, Z, Lu, BR, Chen, J (2004) Pollen flow of cultivated rice measured under experimental conditions. Biodivers Conserv.
Tamura, K, Dudley, J, Nei, M, Kumar, S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol.
Templeton, AR (2006) Gene flow and population subdivision. Pages 168–203
Population Genetics and Microevolutionary Theory. Hoboken, NJ
Thurber, CS, Jia, MH, Jia, YL, Caicedo, AL (2013) Similar traits, different genes? Examining convergent evolution in related weedy rice populations. Mol Ecol.
Wright, S (1949) The genetical structure of populations. Ann Eugenics.
Xia, HB, Wang, W, Xia, H, Zhao, W, Lu, BR (2011) Conspecific crop–weed introgression influences evolution of weedy rice (Oryza sativa f. spontanea) across a geographical range. PLoS ONE.
Yoshida, H, Itoh, J, Ohmori, S, Miyoshi, K, Horigome, A, Uchida, E, Kimizu, M, Matsumura, Y, Kusaba, M, Satoh, H, Nagato, Y (2007) Superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice. Plant Biotechnol J.
Zhang, DL, Zhang, HL, Qi, YW, Wang, MX, Sun, JL, Ding, L, Li, ZC (2013) Genetic structure and eco-geographical differentiation of cultivated Hsien rice (Oryza sativa L. subsp. indica) in China revealed by microsatellites. Chin Sci Bull.
Zhang, DL, Zhang, H, Wang, M, Sun, J, Qi, Y, Wang, F, Wei, X, Han, L, Wang, X, Li, Z (2009) Genetic structure and differentiation of Oryza sativa L. in China revealed by microsatellites. Theor Appl Genet.
Zhou, M, Xu, H, Wei, X, Ye, Z, Wei, L, Gong, W, Wang, Y, Zhu, Z (2006) Identification of a glyphosate-resistant mutant of rice 5-enolpyruvylshikimate 3-phosphate synthase using a directed evolution strategy. Plant Physiol.
Ziska, LH, Gealy, DR, Tomecek, MB, Jackson, AK, Black, HL (2012) Recent and projected increases in atmospheric CO2 concentration can enhance gene flow between wild and genetically altered rice (Oryza sativa). PLoS ONE.