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Appendix: MIAME Glossary

Published online by Cambridge University Press:  15 January 2010

Dov Stekel
Affiliation:
University of Birmingham
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Summary

This appendix has been reproduced in full with permission from MGED. It is also available from:

http://www.mged.org/Workgroups/MIAME/miame_glossary.html

Age The time period elapsed since an identifiable point in the life cycle of an organism. (If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting) [MGED Ontology Definition]

Amount of nucleic acid labeled The amount of nucleic acid labeled

Amplification method The method used to amplify the nucleic acid extracted

Array design The layout or conceptual description of array that can be implemented as one or more physical arrays. The array design specification consists of the description of the common features of the array as the whole, and the description of each array design elements (e.g., each spot). MIAME distinguishes between three levels of array design elements: feature (the location on the array), reporter (the nucleotide sequence present in a particular location on the array), and composite sequence (a set of reporters used collectively to measure an expression of a particular gene)

Array design name Given name for the array design, that helps to identify a design between others (e.g., EMBL yeast 12K ver1.1)

Array dimensions The physical dimension of the array support (e.g., of slide)

Array related information Description of the array as the whole Attachment How the element (reporter) sequences are physically attached to the array (e.g., covalent, ionic) Author, laboratory, and contact Person(s) and organization(s) names and details (address, phone, FAX, email, URL)

Biomaterial manipulation Information on the treatment applied to the biomaterial

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Chapter
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Publisher: Cambridge University Press
Print publication year: 2003

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  • Appendix: MIAME Glossary
  • Dov Stekel, University of Birmingham
  • Book: Microarray Bioinformatics
  • Online publication: 15 January 2010
  • Chapter DOI: https://doi.org/10.1017/CBO9780511615535.015
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  • Appendix: MIAME Glossary
  • Dov Stekel, University of Birmingham
  • Book: Microarray Bioinformatics
  • Online publication: 15 January 2010
  • Chapter DOI: https://doi.org/10.1017/CBO9780511615535.015
Available formats
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Save book to Google Drive

To save content items to your account, please confirm that you agree to abide by our usage policies. If this is the first time you use this feature, you will be asked to authorise Cambridge Core to connect with your account. Find out more about saving content to Google Drive.

  • Appendix: MIAME Glossary
  • Dov Stekel, University of Birmingham
  • Book: Microarray Bioinformatics
  • Online publication: 15 January 2010
  • Chapter DOI: https://doi.org/10.1017/CBO9780511615535.015
Available formats
×