Using a morphology-based approach, we explore the relationships between three poorly understood species of organic-walled Foraminifera. Thalmann and Bermudez (1954) described Chitinosiphon rufescens as the type species of a new monotypic genus which they compared to the tubular agglutinated foraminiferan Bathysiphon. Loeblich and Tappan (1964), however, considered C. rufescens to be identical to Reophax membranacea Brady 1879, type species of another organic-walled genus, Nodellum. Based on a re-examination of the type specimens of both species, new material of C. rufescens from the Lost City hydrothermal field, and new material of N. membranacea from the NE Atlantic and Pacific Oceans, we show that these two deep-sea species are distinguished by the following features. (1) Chitinosiphon rufescens lacks the distinct, regular constrictions that divide the tubular test of N. membranacea into a series of segments. (2) The proloculus is spindle-shaped in C. rufescens but sub-cylindrical in N. membranacea. (3) A distinctive, pocket-like invagination is developed at the base (proximal end) of the proloculus in N. membranacea but not in C. rufescens. However, a series of undescribed species which occur in deep-sea sediments blur the distinction between the two genera. We therefore adopt a conservative position and regard Chitinosiphon as a junior synonym of Nodellum. We also examined the holotype and new material of Nodellum moniliforme Resig, 1982, the type species of Resigella Loeblich and Tappan, 1984, in which the organic-walled test comprises a series of bulbous chambers. This species exhibits a basal invagination, identical to the feature present in Nodellum membranacea. These three remarkable species are united by the basically tubular test and the nature of the test wall which is largely organic, brownish in colour, and exhibits no internal structure when broken sections are examined by SEM. The surface of the organic test of Nodellum rufescens from Lost City is strewn with tiny (≤1 μm), needle-shaped mineral particles, visible only by SEM. More equidimensional, micron-sized particles are present in the other two species. We agree with Thalmann and Bermudez (1954) that N. rufescens is related to tubular agglutinated taxa such as Bathysiphon. Resigella may have similar affinities, although this needs to be tested using molecular approaches.

We report the occurrence of a high diversity of minute (∼1 μm diameter) organic and siliceous protistan scales in small samples (total volume ∼35 μl) of superficial sediment from the Porcupine Abyssal Plain (PAP), north-east Atlantic (4850 m water depth). Many exhibit characters by which they can be identified to species. The organic scales belong to the haptophyte genera Chrysochromulina (8–9 species), Chrysocampanula and Dolichomastix (1 species each). The siliceous scales belong to the chrysophytes Paraphysomonas vestita and Meringosphaera sp. and to the heterotrophic flagellate genus Thaumatomastix (T. dybsoeana, T. formosa, Thaumatomastix sp.). As far as we are aware, this is the first time that non-calcareous protistan scales have been observed in deep-sea sediments (although siliceous skeletal plates and cysts are reported). All scales probably originated from the upper water column and were delivered to the deep-sea floor on rapidly sinking detrital aggregates. However, naked heterotrophic flagellates are known to thrive in abyssal sediment habitats and so the possibility that some scale-bearing protists also live in benthic deep-sea environments cannot be eliminated. Many species identified at the PAP site are common in coastal marine waters around Europe; some occur as far afield as Tasmania and New Zealand. Five Chrysochromulina species are known from central oceanic areas, including parts of the North Atlantic, while another species, C. pringsheimii, is reported from a British freshwater lake. We retrieved ∼15% of the 55 named Chrysochromulina species (∼8% of the estimated total number of species in this diverse group) in the ∼35 μl of abyssal sediment. Because the scales can persist and be identified after cell death, they may provide useful time- and space-averaged information about the distribution of protist species in marine habitats. The long-term fate of the scales on the sea-floor is unknown. It is possible that at least some of the organic scales are preserved as microfossils in deep-sea sediments.

Recent studies indicate that monothalamous (single-chambered) foraminifera are an important component of meiobenthic communities in the brackish, coastal waters of the Black Sea. The dominant taxa include Psammophaga and Vellaria, both of which are common in estuarine settings in other parts of the world. Here, we describe Tinogullmia lukyanovae sp. nov. from the Crimean and Caucasus regions of the Black Sea. The new species is several hundreds of microns in size. It is characterized by a more or less symmetrical, spindle-shaped to cylindrical, organic-walled test with two terminal apertural structures, usually in the form of rounded or more elongate, nipple-like projections. The protoplasm is finely granular and a nucleus is not visible. The new species typically occurs in well-oxygenated water at depths of a few tens of metres or less. A specimen from a 250-m deep site off the Caucasus coast, tentatively assigned to T. lukyanovae sp. nov., is of particular interest because it occurs at a depth where the bottom water is anoxic and sulphidic.

Conqueria laevis gen. and sp. nov., a new monothalamous agglutinated foraminiferan, is described from core samples collected in the abyssal western Weddell Sea. The species is characterized by a very elongate, almost cylindrical test that usually follows a more or less curved course and has a single terminal aperture located at the end of a short neck. The wall has a very smooth outer surface and is composed of tiny (<5 μm) agglutinated particles. Very similar and presumably congeneric morphotypes occur at northern hemisphere sites, including Arctic fjords around Svalbard and the Porcupine Abyssal Plain. Molecular phylogenetic analyses, based on small subunit rRNA gene sequences, indicate that the new Weddell Sea species forms an independent lineage branching among monothalamous foraminiferans as a sister group to the clade of Psammophaga.

Vellaria zucchellii sp. nov. is described from coastal sediment samples from Terra Nova Bay (Ross Sea, Antarctica, 74°40′28.1″S, 164°04′11.6″E, Tethys Bay, 25 m depth). This organic-walled monothalamous (single chambered) foraminifer is characterized by a wide, prominent aperture that facilitates attachment to larger particles (small sand grains or other foraminiferal shells). It shares this feature with the two other known species of Vellaria, both of which were described from an Indian estuary. Phylogenetic analysis of small subunit rRNA gene sequences suggest that V. zucchellii is related to the genus Psammophaga. However, the new species lacks the mineral grain inclusions that are characteristic of Psammophaga. The description of this new organic-walled monothalamous foraminiferal species further documents the high taxonomic diversity of these delicate and abundant protists in the polar benthic communities.

A specimen of the deep-water, spatangoid urchin, Cystochinus loveni, wearing a costume of agglutinated protists, was collected from 3088 m in the Gulf of Alaska, north-east Pacific. Over 24 putative taxa of living and dead foraminiferans and xenophyophores, as well as a sipunculan, polychaete, tanaid, and two isopods, were collected from the dorsal surface of this single individual. This is the first report of a deep-sea urchin using rhizopod protists and it is proposed that the urchin acquires camouflage or benefits from increased specific gravity associated with the protistan cloak.

During the past two decades, biologists have become increasingly aware of the diversity and abundance of foraminifera in marine benthic ecosystems. These protists are probably the most important eukaryotes present in ocean floor communities. In some areas, particularly central oceanic regions, foraminiferal assemblages are dominated by newly discovered, soft-bodied forms with morphologies quite unlike those of “conventional” foraminifers and with little fossilisation potential. However, despite the presumed loss of these delicate forms from the fossil record, foraminiferal tests are still the only microfossils to occur commonly in ancient deep-sea sediments. Thus, they are a focus of attention for both geologists and biologists. This presentation will concentrate on two main areas of biological research which have palaeontological significance.

Foraminiferal microhabitats. Recent research indicates that particular species tend to live infaunally (deep or shallow), epifaunally or suprabenthically. Growth above or below the sediment-water interface has major implications for the stable isotope chemistry of calcareous tests, an important tool in palaeooceanography. Other species inhabit organic detritus composed of phytoplankton material rapidly sedimented from the euphotic zone. This “phytodetritus” arrives suddenly on the ocean floor following the spring bloom and is quickly colonized by foraminiferal species which feed on it, reproduce and rapidly develop large populations. These populations collapse when the food source is exhausted. The direct consumption of phytodetritus (and other organic matter inputs) by benthic foraminifers may be a widespread phenomenon which influences their population dynamics, regional distribution patterns and isotope chemistry.

Recolonization. The defaunation of large tracts of ocean floor by turbidity currents or anoxic events must have happened on countless occasions over geological time, particularly along ocean margins and in basinal areas. Evidence from sediment tray experiments suggests that it may take several years for a stable community (including foraminifers) to become reestablished in small areas of defaunated sediment. Large devastated areas may require substantially longer to recover. However, on the Madeira Abyssal Plain, a normal foraminiferal assemblage occurs on the surface of a turbidite deposited several hundred years ago, suggesting that large-scale recolonization may occupy decades rather than centuries. The fossil foraminiferal assemblages present in deep-water flysch sequences are presumably the product of similar recolonization (?successional) events.

These and other biological processes often operate on time scales (days, months, years) which usually can not be resolved in the stratigraphic record. This inevitably complicates the application of biological research to palaeontology.