Research Article
The Cyborg Astrobiologist: matching of prior textures by image compression for geological mapping and novelty detection
- P.C. McGuire, A. Bonnici, K.R. Bruner, C. Gross, J. Ormö, R.A. Smosna, S. Walter, L. Wendt
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- Published online by Cambridge University Press:
- 19 February 2014, pp. 191-202
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We describe an image-comparison technique of Heidemann and Ritter (2008a, b), which uses image compression, and is capable of: (i) detecting novel textures in a series of images, as well as of: (ii) alerting the user to the similarity of a new image to a previously observed texture. This image-comparison technique has been implemented and tested using our Astrobiology Phone-cam system, which employs Bluetooth communication to send images to a local laptop server in the field for the image-compression analysis. We tested the system in a field site displaying a heterogeneous suite of sandstones, limestones, mudstones and coal beds. Some of the rocks are partly covered with lichen. The image-matching procedure of this system performed very well with data obtained through our field test, grouping all images of yellow lichens together and grouping all images of a coal bed together, and giving 91% accuracy for similarity detection. Such similarity detection could be employed to make maps of different geological units. The novelty-detection performance of our system was also rather good (64% accuracy). Such novelty detection may become valuable in searching for new geological units, which could be of astrobiological interest. The current system is not directly intended for mapping and novelty detection of a second field site based on image-compression analysis of an image database from a first field site, although our current system could be further developed towards this end. Furthermore, the image-comparison technique is an unsupervised technique that is not capable of directly classifying an image as containing a particular geological feature; labelling of such geological features is done post facto by human geologists associated with this study, for the purpose of analysing the system's performance. By providing more advanced capabilities for similarity detection and novelty detection, this image-compression technique could be useful in giving more scientific autonomy to robotic planetary rovers, and in assisting human astronauts in their geological exploration and assessment.
The persistence of a chlorophyll spectral biosignature from Martian evaporite and spring analogues under Mars-like conditions
- J. M. Stromberg, D. M. Applin, E. A. Cloutis, M. Rice, G. Berard, P. Mann
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- Published online by Cambridge University Press:
- 17 December 2013, pp. 203-223
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Spring and evaporite deposits are considered two of the most promising environments for past habitability on Mars and preservation of biosignatures. Manitoba, Canada hosts the East German Creek (EGC) hypersaline spring complex, and the post impact evaporite gypsum beds of the Lake St. Martin (LSM) impact. The EGC complex has microbial mats, sediments, algae and biofabrics, while endolithic communities are ubiquitous in the LSM gypsum beds. These communities are spectrally detectable based largely on the presence of a chlorophyll absorption band at 670 nm; however, the robustness of this feature under Martian surface conditions was unclear. Biological and biology-bearing samples from EGC and LSM were exposed to conditions similar to the surface of present day Mars (high UV flux, 100 mbar, anoxic, CO2 rich) for up to 44 days, and preservation of the 670 nm chlorophyll feature and chlorophyll red-edge was observed. A decrease in band depth of the 670 nm band ranging from ∼16 to 80% resulted, with correlations seen in the degree of preservation and the spatial proximity of samples to the spring mound and mineral shielding effects. The spectra were deconvolved to Mars Exploration Rover (MER) Pancam and Mars Science Laboratory (MSL) Mastcam science filter bandpasses to investigate the detectability of the 670 nm feature and to compare with common mineral features. The red-edge and 670 nm feature associated with chlorophyll can be distinguished from the spectra of minerals with features below ∼1000 nm, such as hematite and jarosite. However, distinguishing goethite from samples with the chlorophyll feature is more problematic, and quantitative interpretation using band depth data makes little distinction between iron oxyhydroxides and the 670 nm chlorophyll feature. The chlorophyll spectral feature is observable in both Pancam and Mastcam, and we propose that of the proposed EXOMARS Pancam filters, the PHYLL filter is best suited for its detection.
Biological radiation dose from secondary particles in a Milky Way gamma-ray burst
- Dimitra Atri, Adrian L. Melott, Andrew Karam
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- Published online by Cambridge University Press:
- 17 December 2013, pp. 224-228
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Gamma-ray bursts (GRBs) are a class of highly energetic explosions emitting radiation in a very short timescale of a few seconds and with a very narrow opening angle. Although, all GRBs observed so far are extragalactic in origin, there is a high probability of a GRB of galactic origin beaming towards the Earth in the past ∼0.5 Gyr. We define the level of catastrophic damage to the biosphere as approximation 100 kJ m−2, based on Thomas et al. (2005a, b). Using results in Melott & Thomas (2011), we estimate the probability of the Earth receiving this fluence from a GRB of any type, as 87% during the last 500 Myr. Such an intense burst of gamma rays would ionize the atmosphere and deplete the ozone (O3) layer. With depleted O3, there will be an increased flux of Solar UVB on the Earth's surface with potentially harmful biological effects. In addition to the atmospheric damage, secondary particles produced by gamma ray-induced showers will reach the surface. Among all secondary particles, muons dominate the ground-level secondary particle flux (99% of the total number of particles) and are potentially of biological significance. Using the Monte Carlo simulation code CORSIKA, we modelled the air showers produced by gamma-ray primaries up to 100 GeV. We found that the number of muons produced by the electromagnetic component of hypothetical galactic GRBs significantly increases the total muon flux. However, since the muon production efficiency is extremely low for photon energies below 100 GeV, and because GRBs radiate strongly for only a very short time, we find that the biological radiation dose from secondary muons is negligible. The main mechanism of biological damage from GRBs is through Solar UVB irradiation from the loss of O3 in the upper atmosphere.
Swansong biospheres II: the final signs of life on terrestrial planets near the end of their habitable lifetimes
- Jack T. O'Malley-James, Charles S. Cockell, Jane S. Greaves, John A. Raven
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- Published online by Cambridge University Press:
- 14 January 2014, pp. 229-243
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The biosignatures of life on Earth do not remain static, but change considerably over the planet's habitable lifetime. Earth's future biosphere, much like that of the early Earth, will consist of predominantly unicellular microorganisms due to the increased hostility of environmental conditions caused by the Sun as it enters the late stage of its main sequence evolution. Building on previous work, the productivity of the biosphere is evaluated during different stages of biosphere decline between 1 and 2.8 Gyr from present. A simple atmosphere–biosphere interaction model is used to estimate the atmospheric biomarker gas abundances at each stage and to assess the likelihood of remotely detecting the presence of life in low-productivity, microbial biospheres, putting an upper limit on the lifetime of Earth's remotely detectable biosignatures. Other potential biosignatures such as leaf reflectance and cloud cover are discussed.
Habitability around F-type stars
- S. Sato, M. Cuntz, C. M. Guerra Olvera, D. Jack, K.-P. Schröder
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- Published online by Cambridge University Press:
- 25 March 2014, pp. 244-258
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We explore the general astrobiological significance of F-type main-sequence stars with masses between 1.2 and 1.5 M⊙. Special consideration is given to stellar evolutionary aspects due to nuclear main-sequence evolution. DNA is taken as a proxy for carbon-based macromolecules following the paradigm that extraterrestrial biology may be most likely based on hydrocarbons. Consequently, the DNA action spectrum is utilized to represent the impact of the stellar ultraviolet (UV) radiation. Planetary atmospheric attenuation is taken into account based on parameterized attenuation functions. We found that the damage inflicted on DNA for planets at Earth-equivalent positions is between a factor of 2.5 and 7.1 higher than for solar-like stars, and there are intricate relations for the time-dependence of damage during stellar main-sequence evolution. If attenuation is considered, smaller factors of damage are obtained in alignment to the attenuation parameters. This work is motivated by earlier studies indicating that the UV environment of solar-type stars is one of the most decisive factors in determining the suitability of exosolar planets and exomoons for biological evolution and sustainability.
Salinity and pH affect Na+-montmorillonite dissolution and amino acid adsorption: a prebiotic chemistry study
- Ana Paula S. F. Farias, Yasmin S. Tadayozzi, Cristine E. A. Carneiro, Dimas A. M. Zaia
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- Published online by Cambridge University Press:
- 23 June 2014, pp. 259-270
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The adsorption of amino acids onto minerals in prebiotic seas may have played an important role for their protection against hydrolysis and formation of polymers. In this study, we show that the adsorption of the prebiotic amino acids, glycine (Gly), α-alanine (α-Ala) and β-alanine (β-Ala), onto Na+-montmorillonite was dependent on salinity and pH. Specifically, adsorption decreased from 58.3–88.8 to 0–48.9% when salinity was increased from 10 to 100–150% of modern seawater. This result suggests reduced amino acid adsorption onto minerals in prebiotic seas, which may have been even more saline than the tested conditions. Amino acids also formed complexes with metals in seawater, affecting metal adsorption onto Na+-montmorillonite, and amino acid adsorption was enhanced when added before Na+-montmorillonite was exposed to high saline solutions. Also, the dissolution of Na+-montmorillonite was reduced in the presence of amino acids, with β-Ala being the most effective. Thus, prebiotic chemistry experiments should also consider the integrity of minerals in addition to their adsorption capacity.
Comparative analysis of cyanobacteria inhabiting rocks with different light transmittance in the Mojave Desert: a Mars terrestrial analogue
- Heather D. Smith, Mickael Baqué, Andrew G. Duncan, Christopher R. Lloyd, Christopher P. McKay, Daniela Billi
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- Published online by Cambridge University Press:
- 14 May 2014, pp. 271-277
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The Mojave Desert has been long considered a suitable terrestrial analogue to Mars in many geological and astrobiological aspects. The Silver Lake region in the Mojave Desert hosts several different rock types (talc, marble, quartz, white carbonate and red-coated carbonate) colonized by hypoliths within a few kilometres. This provides an opportunity to investigate the effect of rock type on hypolithic colonization in a given environment. Transmission measurements from 300 to 800 nm showed that the transmission of blue and UVA varied between rock types. The wavelength at which the transmission fell to 1% of the transmission at 600 nm was 475 nm for white carbonate and quartz, 425 nm for red-coated carbonate and talc and 380 nm for marble. The comparative analysis of the cyanobacterial component of hypoliths under different rocks, as revealed by sequencing 16S rRNA gene clone libraries, showed no significant variation with rock type; hypoliths were dominated by phylotypes of the genus Chroococcidiopsis, although less abundant phylotypes of the genus Loriellopsis, Leptolyngbya and Scytonema occurred. The comparison of the confocal laser scanning microscopy-λ (CLSM-λ) scan analysis of the spectral emission of the photosynthetic pigments of Chroococcidiopsis in different rocks with the spectrum of isolated Chroococcidiopsis sp. 029, revealed a 10 nm red shift in the emission fingerprinting for quartz and carbonate and a 5 nm red shift for talc samples. This result reflects the versatility of Chroococcidiopsis in inhabiting dry niches with different light availability for photosynthesis.