Locating activity hotspots – areas of higher density, more intense use, or distinct social units – is a prerequisite for answering many questions in animal ecology. However, for many species, carrying out such research from direct observations in tropical habitat is time-consuming and unrealistic for non-habituated animals. This study aimed to locate chimpanzee home ranges from transect nest counts. For validation purposes, 233 line transects were sampled within the home ranges of four habituated social groups of chimpanzees in Taï National Park, Côte d'Ivoire. In total, 373 km of transects were surveyed over 188 days and 683 nests of chimpanzee were recorded. First, we characterized heterogeneity of nest distribution patterns, including variation in density and group size within the area. Second, we used scan statistics, a likelihood-based cluster technique to locate chimpanzee social groups and compared them with the known home range boundaries. Chimpanzee nest distribution was characterized by a positive density and group-size gradient away from the range periphery. Furthermore, nest distribution clusters corresponding to the four groups could be successfully identified, although additional clusters for, for example, low-density areas between social groups seem to be an unavoidable by-product. The approach taken can be extended to a wide spectrum of data stemming from direct observations, camera traps, acoustic or genetic sampling to derive information about structure and patchiness of wild animal populations.

The neotropical terrestrial insectivore Henicorhina leucosticta (Troglodytidae) maintains long-term territories through vocalizations and forages among leaf litter trapped in the understorey vegetation and ground litter. The relationship between forest structure and H. leucosticta territory size was studied in La Selva Biological Station, Costa Rica, during the non-breeding season in 2009. Forest structure was measured by assessing canopy openness and leaf area index (LAI) using hemispherical photography, while territory size was estimated with the playback technique using local conspecific vocalizations. Mean territory area was 3.8 ± 2.8 ha (mean ± SD, n = 10). Territory radius length was similar in old-growth forest and abandoned agro-forest plantations. We found that H. leucosticta territory size decreased as median LAI increased. We propose that LAI is related to territory size through the amount of leaf fall and subsequent leaf litter accumulation over the understorey plants, which constitutes an important reservoir of arthropod prey and nest materials for H. leucosticta. The long-term supply of food resources is likely to affect territory size in this species, as well as other insectivorous birds with similar foraging behaviour. These results are congruent with the structural cues hypothesis.

We investigated the pollinator assemblage in Myristica dactyloides, a dioecious tree species occupying the intermediate canopy stratum of the mid- and high-elevation wet evergreen forests and endemic to Sri Lanka and the Western Ghats of India. We surveyed two populations and, in one of them, marked four male and three female trees for observations on floral display and insect foraging, and two female trees for experimental pollination. Yellow sticky traps were used to sample insects in the canopy during the flowering season of December 2007 in addition to direct observations of insect activity in 2006. Myristicaceae members from other tropical areas have been reported to be specialized to beetle pollination, but our observations provide evidence of a generalist pollination system in M. dactyloides, composed of small, diverse insects: thysanopterans (thrips), coleopterans (beetles), halictid bees and dipterans (syrphid and phorid flies). Quantifying floral display, we found that female inflorescences were smaller, offered no reward and attracted significantly fewer pollinators in comparison to male inflorescences. Fruit set was low and could be attributed to a 29% flower abscission and abortion of young fruits, but a reasonably high natural pollination efficiency combined with pollination experiments established that there was no pollination limitation in the study population.

Plant functional types across environmental gradients can be considered as a powerful proxy that reveals vegetation–environment relationships. The objectives of this study were to investigate the response in the relative abundance of plant functional types along altitudinal gradients and to examine the relationship of plant functional types to environmental variables. The study was conducted in the Gughe-Amaro Mountains, in the south-west Ethiopian highlands. We established 74 plots with an area of 400 m2 (20 × 20 m) each along altitudinal ranges between 1000 and 3000 m asl. Data on site environmental conditions and on the abundance of plant functional types were analysed using the constrained linear ordination technique (RDA) in order to identify the relationships between plant functional types and environmental variables. Altitude, soil organic carbon, soil sand fraction and surface stone cover were significantly related to the relative abundance of plant functional types across the gradient. Tussocks and thorns/spines were abundant in lower altitudinal ranges in response to herbivory and drought while rhizomes and rosettes were abundant at higher altitudes in response to the cold. Generally our results show that topographic attributes (altitude and slope) as well as soil organic carbon play an important role in differentiating the relative abundance of plant functional types in the investigated gradient. Thus, considering specific plant functional types would provide a better understanding of the ecological patterns of vegetation and their response to environmental gradients in tropical regions of Africa prone to drought.

Seed dispersal is a pivotal ecological process but remains poorly understood on Madagascar, where lemurs are key dispersers. The black-and-white ruffed lemur (Varecia variegata) possesses many behavioural and ecological attributes potentially conducive to effective seed dispersal, but no studies have investigated dispersal patterns in this species. This 3-mo study quantified aspects of the primary seed dispersal patterns generated by two Varecia variegata groups (7 individuals). Feeding and ranging behaviour was quantified using behavioural observation (345.6 h), dispersal quantity and seed identity was determined by faecal analysis, and 10-wk germination trials tested effects of gut passage on germination of four species. Individual lemurs dispersed an estimated 104 seeds d−1, of 40 species. Most seeds were large (>10 mm); the largest was 42 mm long. Gut passage was rapid (mean 4.4 h) and generally increased germination speed and success. Mean and maximum inferred dispersal distances were 180 and 506 m respectively; low compared with many anthropoids, but possibly typical of lemurs. Though limited by a short study period, results suggest that the ruffed lemur is an effective disperser of seeds and possibly a critical disperser of large-seeded species which other frugivores cannot swallow. Loss of large-bodied seed dispersers such as Varecia variegata may have far-reaching ecological consequences including impacts on forest structure and dynamics.

Decomposition of leaf litter is an important process that releases energy and nutrients in both terrestrial and aquatic environments (Moore et al. 2004, Wallace et al. 1997); therefore, the physical, chemical and biological processes controlling leaf-litter decomposition rates can affect nutrient cycling and productivity in these systems (Cross et al. 2007, Wood et al. 2009). Several studies have shown that leaf decomposition is faster in aquatic than in terrestrial habitats due to relatively constant temperatures, continuous leaching and the physical breakdown of leaves by flowing water (Hutchens & Wallace 2002, Langhans & Tockner 2006, Langhans et al. 2008). Yet, comparatively few studies have examined these relationships in tropical systems with flooded forests. Flooding is a predominant feature of the upper Amazon Basin, but its occurrence and magnitude is complex and not strictly seasonal (Junk et al. 1989). To identify the dominant energy pathways and understand the nutrient dynamics of upper Amazon rain forests, it is imperative to investigate organic matter processing in the aquatic/terrestrial transition zones of these ecosystems.

Although many studies have now demonstrated that both richness and abundance of gall-inducing insect species are directly and indirectly (via the host plant) influenced by soil quality, the empirical evaluation of it in the field remains anecdotal at best. The effects of soil fertility on richness and abundance of gall-inducing insects associated with a widespread savanna species, Eremanthus glomerulatus, were evaluated under experimental field conditions in Brasilia, central Brazil. The effect of soil fertility on gall-inducing insects species richness was evaluated using three treatments: (1) plots fertilized with nitrogen; (2) plots fertilized with phosphorus; and (3) control plots: soils without fertilization. Species richness of gall-inducing insects (six species of Cecidomyiidae) did not differ among the treatments. Leaves with galls had higher nitrogen concentrations (mean = 15.0 ± 0.5 mg g−1), compared with leaves without galls (mean = 9.0 ± 0.7 mg g−1) on plants that occurred in soils with addition of nitrogen. Similarly, leaves with galls had higher foliar phosphorus concentration (mean = 1.0 ± 0.04 mg g−1) than leaves without galls (mean = 0.6 ± 0.05 mg g−1) in plots with addition of phosphorus. In galled leaves, a negative relationship between gall density and nitrogen concentration was found for one gall-inducing insect species, while three species showed a positive relationship between gall density and leaf nitrogen concentration. A negative relationship between gall density and concentration of leaf phosphorus was observed for four of the six gall-inducing insect species studied. No relationship was found between gall density and leaf nitrogen and phosphorus concentration in ungalled leaves. We argue that foliar nitrogen and phosphorus concentration respond to gall density in galled leaves and therefore, gall-inducing insect species are capable of manipulating their host plant, modifying the foliar nutrients of E. glomerulatus in sclerophyllous savanna.

Nitrogen (N) availability is a major control on fine-root growth and distribution with depth in forest soils. We investigated fine-root dynamics in response to N addition in a montane rain forest with N-limited above-ground production. Control and N-fertilized (125 kg urea-N ha−1 y−1) treatments were laid out in a paired-plot design with four replicates (each 40 × 40 m). During 1.5 y of treatment, fine root-biomass, necromass and production were assessed by sequential coring at three soil depths (organic layer, 0–10 cm and 10–20 cm mineral soil), whereas fine-root redistribution with depth was assessed by ingrowth cores. Total fine-root biomass, necromass and production in the controls were 458 ± 21 g m−2, 101 ± 9 g m−2 and 324 ± 33 g m−2 y−1, respectively. No significant difference at any depth was detected under N fertilization. Fine-root biomass in the organic layer decreased over time under N addition. At 10–20 cm in the mineral soil, fine-root biomass in ingrowth cores increased significantly after 1.5 y of N fertilization compared with the control. The increased available N may have induced the change in fine-root distribution to explore the deeper mineral soil for other nutrients which may cause additional limitation to above-ground production once N limitation is alleviated.

To improve our knowledge of the influence of land-use on solute behaviour and export rates in neotropical montane catchments we investigated total organic carbon (TOC), Ca, Mg, Na, K, NO3 and SO4 concentrations during April 2007–May 2008 at different flow conditions and over time in six forested and pasture-dominated headwaters (0.7–76 km2) in Ecuador. NO3 and SO4 concentrations decreased during the study period, with a continual decrease in NO3 and an abrupt decrease in February 2008 for SO4. We attribute this to changing weather regimes connected to a weakening La Niña event. Stream Na concentration decreased in all catchments, and Mg and Ca concentration decreased in all but the forested catchments during storm flow. Under all land-uses TOC increased at high flows. The differences in solute behaviour during storm flow might be attributed to largely shallow subsurface and surface flow paths in pasture streams on the one hand, and a predominant origin of storm flow from the organic layer in the forested streams on the other hand. Nutrient export rates in the forested streams were comparable to the values found in literature for tropical streams. They amounted to 6–8 kg ha−1 y−1 for Ca, 7–8 kg ha−1 y−1 for K, 4–5 kg ha−1 y−1 for Mg, 11–14 kg ha−1 y−1 for Na, 19–22 kg ha−1 y−1 for NO3 (i.e. 4.3–5.0 kg ha−1 y−1 NO3-N) and 17 kg ha−1 y−1 for SO4. Our data contradict the assumption that nutrient export increases with the loss of forest cover. For NO3 we observed a positive correlation of export value and percentage forest cover.

Many plant species in tropical dry forests partly base their ability to persist after disturbance on resprouting. Yet little is known if this ability can be affected by the intensity and seasonality of disturbance and whether the amount of resources (starch, N, P) stored in the taproot may constrain this response. We investigated resprouting after experimental clipping or burning, applied before or after the dry season and repeatedly in Acacia pennatula individuals in wooded rangelands of North-West Nicaragua. Each treatment was applied to 12 trees and replicated in six plots. One year after the onset of the experiment, survival and biomass recovery were significantly lower in burned than in clipped individuals (78% ± 4% and 75.3 ± 8.0 g vs. 94% ± 2% and 79.1 ± 6.8 g; mean ± SE). Whatever the disturbance applied, trees disturbed after the dry season significantly showed the lowest survival, growth and concentration of N and P. These results suggest that resprouting in dry tropical species may be constrained by intense disturbances (e.g. burning) but especially if they occur towards the end of the dry season. This phenological constraint could be due to the reduced availability of N and P as this dry season progresses.

As the destruction and severe disturbance of primary tropical forest continues, it is important to understand how these forests may recover from perturbations. Considerable work has been done on above-ground recovery but below-ground processes are less well understood. To determine changes in root mass during tropical secondary succession in lowland forests of Central Borneo, samples were taken from stands of increasing ages since abandonment of agriculture (1, 3, 14 and 31 y) with a primary forest control (six plots from 1-y-old stands and three from all other ages). Root mass and elemental concentrations were determined and soils were chemically analysed. There was no increase in root mass with stand age for fine-root (< 2 mm diameter) or small-root (< 5 mm diameter) mass but there was a trend for coarse-root mass (5–10 mm diameter) to increase with stand age. Negative correlations were shown between root mass and soil nutrient status. Fine-root C concentrations increased with stand age but there was no clear effect of stand age on fine-root N or P. Fine-root mass did not increase significantly with stand age suggesting a rapid recovery; instead, soil nutrient status appeared to be the most important factor controlling root mass. Of the soil nutrients measured in this study, N had a stronger control over root mass than P suggesting that this element may be limiting during secondary succession in tropical lowland forests of Borneo.

The main interest in studying monodominant forests in the tropics (i.e. single-dominant forest sensu Richards 1996 and Connell & Lowman 1989) is that processes leading to monodominance may highlight mechanisms controlling species diversity (Hart et al. 1989). Among the various cases of monodominant forest (Hart 1990), the most intriguing are the rare ones that stand in contact with a considerably more diverse forest, without apparent environmental boundaries, and for many generations (i.e. type I sensu Connell & Lowman 1989). Rather than a single mechanism, it is likely that this type of monodominance results from a suite of interacting traits (Torti et al. 2001). This has been well illustrated for the neotropical tree Dicymbe corymbosa whose monodominance relies on: (1) ectomycorrhizal symbiosis (Henkel et al. 2002) linked to (2) mast fruiting (Henkel et al. 2005), (3) high seedling survival rate (Henkel et al. 2005, McGuire 2007a, 2007b) and, potentially, (4) slow litter decomposition (Mayor & Henkel 2006, McGuire et al. 2010), moreover, (5) the reiterative habit of D. corymbosa slows the gap dynamics, and reduces species richness (Woolley et al. 2008). Thus, a comprehensive understanding of monodominance may only emerge from the comparison of many case studies to point out shared mechanisms. Here, we report a new case of a monodominant species: Spirotropis longifolia (DC.) Baill.

The ant assemblages in two common tree species in primary lowland forest of New Guinea were explored using direct canopy access and tuna bait traps. The 19 trees investigated were occupied by 21 ant species of which 18 were canopy inhabitants. On average only 3.6 ant species per tree and 3 species per bait were found. Height of bait position was positively related to ant species richness, with the upper parts of the canopy being occupied by the highest number of species. On the other hand, tree species and study site did not have any effect on ant species richness nor on structure of the ant assemblages. Ant species appeared to be distributed randomly and we did not detect any effect of distance on similarity of ant assemblage occurring on the trees. The dominant species (Crematogaster polita) had certain negative effects on the presence of some species at food sources co-occurring at the same tree, but it did co-occur with the other ants to some extent as well. The majority of species found in the canopy were generalist omnivores (depending mainly on trophobionts or plant exudates).

Does competition prevail in large size classes of trees in tropical forests? This question is fundamental to our understanding of the demography and dynamics occurring in rain forests. We investigated this question based on an undisturbed late-secondary forest on a 1-ha plot in central Cameroon. Trees were stem-mapped and classified into three size classes: understorey, midstorey and overstorey. The diameter at breast height and yearly biomass increment were determined as measures of plant growth and performance. Spatial statistics such as pair- and mark-correlation functions were used to detect scale-dependent patterns that could be caused by competition within and between the three size classes. The results revealed a random pattern and spatially uncorrelated measures of plant growth of overstorey trees. This suggests that competitive effects are of minor importance in the large size class of overstorey trees. Likewise, only weak evidence for competition between trees was found within the two lower size classes. However, negative distance correlations were found between the different size classes. We suggest that competition within height classes was relatively low due to the diversity of species with their variable niche differentiations and phenotypic plasticity that may compensate for competitive effects.

We evaluated effects of corridors between forest fragments surrounded by pastures in tropical Mexico. We used experimental translocations and capture–recapture data to measure the proportion of birds returning and time to return after translocation between connected and unconnected patches (five replicates for each treatment). Depending on each species’ degree of forest dependence (forest-restricted and forest-unrestricted species), we assigned birds to two groups to evaluate influence of species characteristics on effects of corridors on movement. Birds translocated between connected patches (n = 75) were seven times more likely to be recaptured in their original capture site when compared with birds translocated between unconnected patches (n = 109). Effects differed among the two species groups. In the presence of corridors, 46% of forest-unrestricted birds returned to the capture site while only 5% returned between unconnected patches. Forest-restricted birds showed similar results, but were only twice as likely to return to a connected capture site. Birds translocated between unconnected patches took longer to return than birds translocated between connected patches. The strong positive effect of corridors on movement, even for forest-unrestricted species, suggests that forested corridors facilitate bird movement and help maintain connectivity even in this highly fragmented landscape.

Determination of the factors that rule the preference of birds for certain fruits is fundamental to the understanding of the co-evolution of plants and their dispersers (Alves-Costa & Lopes 2001). Plants might compete for dispersers, and the response of dispersers will differ according to the variety of fruits available in nature (Denslow & Moermond 1982, Herrera 1981). Seed dispersal by birds is directly related to certain features of fruit, including colour, size, shape, abundance, nutritional value, habitat and distance between plants that are fruiting (Alves-Costa & Lopes 2001, Galetti et al. 2003, Levey et al. 1994, Murray et al. 1993). To understand how birds integrate these features in terms of fruit choice is a complex and widely misunderstood problem (Levey et al. 1994).

Bird species assemblages in isolated Neotropical highland mountains have been moulded by the drastic climatic changes that occurred in late Pleistocene. Palynological evidence indicates that after the Pleistocene the highlands of Costa Rica and western Panama became isolated as climate turned gradually more tropical and highland vegetation retreated to the upper elevations of high mountains, forming highland islands. We surveyed birds at 10 representative sites throughout the Costa Rican highlands in order to determine the species composition of highland endemic assemblages. The area of available highland habitat explains 77% of the variance in species richness of the 36 highland endemics across highland islands, and the composition of these species assemblages have a nested distribution, rather than being independent sets of species on each island. The observed nested pattern is more consistent with a differential extinction model of species assemblages, and less likely to be explained by differential migration. We conclude that the reduction of highland vegetation and the avifauna associated with it, and its subsequent confinement to the summit of high mountains, is a possible explanation for the current distribution of highland endemic species in Costa Rican highland islands.

Habitat fragmentation is gradually altering tropical forests all around the globe (Wright 2005), as human populations convert large blocks of pristine forest habitats into permanently fragmented or human-modified landscapes (Tabarelli et al. 2004). Fragmentation processes apparently create opportunities for small sets of species, which proliferate across modified landscapes, while others are driven to extinction or remain as minimal populations (Tabarelli et al. 2010). This ‘winners vs. losers paradigm’ (sensu McKinney & Lockwood 1999) probably describes one of the most conspicuous rearrangements of tropical biotas in response to human disturbances (in addition to biomass collapse), with unanticipated consequences for ecosystem functioning and long-term biodiversity persistence (Lôbo et al. 2011). Despite such appeal, the ecological identity of proliferating organisms and the mechanisms underlying their high abundance levels remains poorly appreciated.