Knowledge graphs have become a common approach for knowledge representation. Yet, the application of graph methodology is elusive due to the sheer number and complexity of knowledge sources. In addition, semantic incompatibilities hinder efforts to harmonize and integrate across these diverse sources. As part of The Biomedical Translator Consortium, we have developed a knowledge graph–based question-answering system designed to augment human reasoning and accelerate translational scientific discovery: the Translator system. We have applied the Translator system to answer biomedical questions in the context of a broad array of diseases and syndromes, including Fanconi anemia, primary ciliary dyskinesia, multiple sclerosis, and others. A variety of collaborative approaches have been used to research and develop the Translator system. One recent approach involved the establishment of a monthly “Question-of-the-Month (QotM) Challenge” series. Herein, we describe the structure of the QotM Challenge; the six challenges that have been conducted to date on drug-induced liver injury, cannabidiol toxicity, coronavirus infection, diabetes, psoriatic arthritis, and ATP1A3-related phenotypes; the scientific insights that have been gleaned during the challenges; and the technical issues that were identified over the course of the challenges and that can now be addressed to foster further development of the prototype Translator system. We close with a discussion on Large Language Models such as ChatGPT and highlight differences between those models and the Translator system.

Over the last two decades, anomalous warming events have been observed in coastal Antarctic regions. While these events have been documented in the Ross Sea sector, the Antarctic interior is believed to have been buffered from warming. In this work, we present data from lakes located near Mt. Heekin and Thanksgiving Valley (~85° S) along the Shackleton Glacier, which are believed to be the southern-most Antarctic dry valley lakes. In 2018, the lakes were characterized, repeat satellite images were examined, and lake water chemistry was measured. Our analysis shows that lake areas recently increased, and the water-soluble ion chemistry indicates a flushing of salts from periglacial soils, likely from increased glacial melt as illustrated by water isotope data. Our results show that high southern latitude ice-free areas have likely been affected by warm pulses over the past 60 years and these pulses may be quasi-synchronous throughout the Transantarctic Mountains.

Polar subglacial hydrologic systems have garnered much interest since the recognition of Lake Vostok in 1996. In Antarctica, these environments are hydrologically diverse, including isolated lakes of different sizes, river–lake flow-through systems, “swamps” and groundwater (Siegert 2016). The refreezing of subglacial meltwater is also an important process beneath a large portion of the East Antarctic Ice Sheet (Bell et al. 2011). As subglacial water refreezes it exsolves salts, potentially leaving behind saline and hypersaline brines. Brines thought to derive from this cryoconcentration process have been observed in the northern polar permafrost regions and in the McMurdo Dry Valleys (MDVs) region of Antarctica. Additionally, sediments in the Victoria Land Basin have diagenetic signatures produced by brine movement dating from 3–11 m.y.a, suggesting hypersaline brines have existed in the McMurdo region since at least this time (Staudigel et al. 2018).

The McMurdo Dry Valleys of Antarctica are the largest ice-free region on the continent. These valleys contain numerous water bodies that receive seasonal melt from glaciers. For forty years, research emphasis has been placed on the larger water bodies, the permanent ice-covered lakes. We present results from the first study describing the geochemistry of ponds in the higher elevations of Taylor Valley. Unlike the lakes at lower elevations, the landscape on which these ponds lie is among the oldest in Taylor Valley. These upland ponds wax and wane in size depending on the local climatic conditions, and their ionic concentrations and isotopic composition vary annually depending on the amount of meltwater generated and their hydrologic connectivity. This study evaluates the impact of changes in summer climate on the chemistry of these ponds. Although pond chemistry reflects the initial meltwater chemistry, dissolution and chemical weathering within the stream channels, and possibly permafrost fluid input, the primary control is the dilution effect of glacier melt during warmer summers. These processes lead to differences in solute concentrations and ionic ratios between ponds, despite their nearby proximity. The change in size of these ponds over time has important consequences on their geochemical behaviour and potential to provide water and solutes to the subsurface.

Streams in the McMurdo Dry Valleys, Antarctica, flow during the summer melt season (4–12 weeks) when air temperatures are close to the freezing point of water. Because of the low precipitation rates, streams originate from glacial meltwater and flow to closed-basin lakes on the valley floor. Water samples have been collected from the streams in the Dry Valleys since the start of the McMurdo Dry Valleys Long-Term Ecological Research project in 1993 and these have been analysed for ions and nutrient chemistry. Controls such as landscape position, morphology of the channels, and biotic and abiotic processes are thought to influence the stream chemistry. Sea-salt derived ions tend to be higher in streams that are closer to the ocean and those streams that drain the Taylor Glacier in western Taylor Valley. Chemical weathering is an important process influencing stream chemistry throughout the Dry Valleys. Nutrient availability is dependent on landscape age and varies with distance from the coast. The streams in Taylor Valley span a wide range in composition and total dissolved solids and are surprisingly similar to a wide range of much larger temperate and tropical river systems.