Otoliths are an excellent tool for analysing the pattern of habitat use between adults and juveniles and connectivity between fish populations. Larimus breviceps is a species belonging to the family Sciaenidae, which has an important role in the marine food chain, as it is one of the most abundant and frequent species in the bycatch of coastal shrimp fisheries in Brazil. The present study aimed at comparing the otolith shape of specimens collected in three different Brazilian coastal areas: Sergipe (SE), northeastern region; São Paulo (SP), southeastern region; and Paraná (PR), southern region. In a laboratory, 88 otoliths were extracted, photographed, and the contour was analysed by the wavelet method (32 from SE, 28 from SP, and 28 from PR). The otolith contours varied between sampling sites. Linear discriminant analysis correctly reclassified 60.23% otoliths by the sampled sites, with the best reclassifications occurring in SE (62.5%), followed by PR (60.71%) and SP (57.14%). Multivariate analysis of variance also evidenced significant differences in contours among the sampling sites (F = 2.3; P < 0.005). Thus, two morphotypes of otoliths were found for L. breviceps: one from Sergipe (northeastern Brazil) and the second one from southeastern–southern Brazil, indicating connectivity between the populations off São Paulo and Paraná, to be confirmed by future genetic studies.