The particle trajectories in irrotational, incompressible and inviscid deep-water surface gravity waves are open, leading to a net drift in the direction of wave propagation commonly referred to as the Stokes drift, which is responsible for catalysing surface wave-induced mixing in the ocean and transporting marine debris. A balance between phase-averaged momentum density, kinetic energy density and vorticity for irrotational, monochromatic and spatially periodic two-dimensional water waves is derived by working directly within the Lagrangian reference frame, which tracks particle trajectories as a function of their labels and time. This balance should be expected as all three of these quantities are conserved following particles in this system. Vorticity in particular is always conserved along particles in two-dimensional inviscid flow, and as such even in its absence it is the value of the vorticity that fundamentally sets the drift, which in the Lagrangian frame is identified as the phase-averaged momentum density of the system. A relationship between the drift and the geometric mean water level of particles is found at the surface, which highlights connections between the geometry and dynamics. Finally, an example of an initially quiescent fluid driven by a wavelike pressure disturbance is considered, showing how the net momentum and energy from the surface pressure disturbance transfer to the wave field, and recognizing the source of the mean Lagrangian drift as the net momentum required to generate an irrotational surface wave by any conservative force.

We describe a case of healthcare-associated bloodstream infection due to Mycobacterium fortuitum. Whole-genome sequencing showed that the same strain was isolated from the shared shower water of the unit. Nontuberculous mycobacteria frequently contaminate hospital water networks. Preventative actions are needed to reduce the exposure risk for immunocompromised patients.

Migratory birds are implicated in dispersing haemosporidian parasites over great geographic distances. However, their role in sharing these vector-transmitted blood parasites with resident avian host species along their migration flyway is not well understood. We studied avian haemosporidian parasites in 10 localities where Chilean Elaenia, a long-distance Neotropical austral migrant species, spends part of its annual cycle to determine local parasite transmission among resident sympatric host species in the elaenia's distributional range across South America. We sampled 371 Chilean Elaenias and 1,818 birds representing 243 additional sympatric species from Brazilian wintering grounds to Argentinian breeding grounds. The 23 haemosporidian lineages found in Chilean Elaenias exhibited considerable variation in distribution, specialization, and turnover across the 10 avian communities in South America. Parasite lineage dissimilarity increased with geographic distance, and infection probability by Parahaemoproteus decreased in localities harbouring a more diverse haemosporidian fauna. Furthermore, blood smears from migrating Chilean Elaenias and local resident avian host species did not contain infective stages of Leucocytozoon, suggesting that transmission did not take place in the Brazilian stopover site. Our analyses confirm that this Neotropical austral migrant connects avian host communities and transports haemosporidian parasites along its distributional range in South America. However, the lack of transmissive stages at stopover site and the infrequent parasite lineage sharing between migratory host populations and residents at breeding and wintering grounds suggest that Chilean Elaenias do not play a significant role in dispersing haemosporidian parasites, nor do they influence local transmission across South America.

This paper presents a deep-learning-based workflow to detect synapses and predict their neurotransmitter type in the primitive chordate Ciona intestinalis (Ciona) electron microscopic (EM) images. Identifying synapses from EM images to build a full map of connections between neurons is a labor-intensive process and requires significant domain expertise. Automation of synapse classification would hasten the generation and analysis of connectomes. Furthermore, inferences concerning neuron type and function from synapse features are in many cases difficult to make. Finding the connection between synapse structure and function is an important step in fully understanding a connectome. Class Activation Maps derived from the convolutional neural network provide insights on important features of synapses based on cell type and function. The main contribution of this work is in the differentiation of synapses by neurotransmitter type through the structural information in their EM images. This enables the prediction of neurotransmitter types for neurons in Ciona, which were previously unknown. The prediction model with code is available on GitHub.

Tree ferns are slow-growing and long-lived components of temperate forests; however, these characteristics make determining size-age and population dynamics through mensuration approaches problematic while dendroecological approaches cannot be used. In this study, we use radiocarbon (14C) dating of Cyathea australis and Dicksonia antarctica to (1) determine their age-to-size relationships, (2) reconstruct the age distribution of tree fern species, and (3) test if predicted ages align with the ages of the co-occurring tree community and observed disturbance history. We used the best age-size models to reconstruct the population structure of tree ferns sampled in five paired rainforest and old-growth eucalypt stands and compared these to the age structure of co-occurring tree species. The species had similar growth allometry; however, C. australis grew four times faster than D. antarctica. The age class structures of tree ferns were congruent with the associated tree species and reflected known fire history and snowfall events in the region. Tree fern abundance increased with increasing time-since-fire and post canopy disturbance. The study demonstrates that 14C dating of tree ferns provides a means of investigating tree fern demographics and the role of disturbance in shaping their population structure in forests of southeast Australia.

Native palladium is rare and occurs in oxidizing environments (hematite stability field) and consistently has very low contents of other metals. On the other hand, gold may contain significant amounts of alloyed palladium. A nugget of palladian gold, obtained from a specularite-rich auriferous vein (‘jacutinga’) of the Gongo Soco iron ore mine, Quadrilátero Ferrífero, Minas Gerais, allows the definition of a paragenetic sequence of native palladium formation. The cm-sized nugget is brecciated and consists of fragments of palladian gold [Au0.79Pd0.09Cu0.07Ag0.04Hg0.01] with inclusions of isomertieite [Pd11Sb2As2], cemented by kaolinite-hematite-palladian gold infill. The isomertieite inclusions are preferentially fractured and display various degrees of alteration to a Pd-O phase. Native palladium occurs as a crystallized component within the Pd-O phase, with microstructural and chemical features suggesting a desiccation process. It is proposed that native palladium forms by (1) oxidation of a pre-existent palladium mineral to a Pd-O phase, and (2) subsequent crystallization of native palladium from the Pd-O phase, by oxygen loss and dehydration. This process operates in a low-temperature hydrothermal or weathering environment and leads to strong fractionation of palladium and gold.

New data on the Gongo Soco palladium-oxygenated compounds are presented for the first time since the work of Johnson and Lampadius (1837). A variety of PdO species is documented, always in association with Cu, Fe and Mn, and includes Pd(OH)2 or PdO.H2O, and phases with metal excess in relation to oxygen, interpreted as metastable. Their remarkable occurrence in ‘ouro preto’ (black gold) and jacutinga (auriferous itabirite/iron ore) is the result of mertieite-II alteration. It involves leaching of Sb and As, limited removal of Pd, and incorporation of Cu, Mn and Hg into PdO species. The locus of Hg-bearing PdO species in microfractures parallel to the enclosing gold-mineralized shear band suggests at least one low-temperature hydrothermal generation. The presence of a halite crystal attached to gold testifies to the involvement of Cl-saturated hydrothermal fluids in the oxidizing environment of jacutinga formation.

Cellular adhesion depends on the integration of numerous signaling inputs generated by the chemical and physical properties of the substrate. The complex coupling among inputs makes it challenging experimentally to deconvolve their individual contributions to the adhesion process. To address this roadblock, we have employed a combination of electron beam and optical lithographic techniques to fabricate substrates with independently tunable topographical and chemical signaling cues. Arrays of gold nanostructures were patterned atop quartz substrates, half of which were etched into gold-capped nanopillars. Individual A549 cells exposed simultaneously to Arg-Gly-Asp-functionalized etched and non-etched arrays exhibited strongly preferential adherence to the nanopillars.

The growing movement of people and goods that started in the closing years of the twentieth century has increased the possibility of the accidental or intentional introduction of biohazards that can affect agricultural production in the United States. This study examines the ex ante decision between the deployment of monitoring devices (traps) versus the use of countermeasures to control Mediterranean fruit flies in Florida. To examine this tradeoff, this study outlines a mathematical model to study the effectiveness of traps and the cost of treatment. The empirical results presented in this study indicate that additional parameterization efforts are needed.

The aim of this study was to evaluate the variations of protein, casein, saturated (SFA), unsaturated (UFA), monounsaturated (MUFA), polyunsaturated (PUFA) fatty acids contents and cheese yield in the milk of two groups of Italian Brown cows conventionally reared in indoor period of housing or consuming pasture during the summer months in 2008 and 2013. Milk components were obtained from samples collected during the national routine (conventionally reared) and ‘extraordinary’ (pasture period) milk recording scheme in herds located near Sondrio (Lombardia, Italy). Milk samples were processed with the MilkoScanTM FT6000 for the identification of milk casein, SFA, UFA, MUFA and PUFA composition. The groups were analysed separately per year and the environmental factors affecting milk protein, casein, and fatty acids contents (pasture/indoor, parity, data of sampling, days in milk, days from collection to analysis) were included in the MIXED procedure of SAS 9.3. A total of 778 milk samples were available, including 234 records from indoor and 544 observations from pasture feeding. Pasture intake affected the content of casein (%) and the proportion of fat in milk (g/100 g), enhancing milk casein levels (from 2·90 to 3) and reducing the concentration of milk SFA in milk from grazing cows (from 2·29 to 1·92). Additionally, the cheese yield was calculated as ‘kg of cheese per 100 kg of milk’ and resulted to be 10·4 and 12 in 2008 from milk of cows reared indoor and with pasture based diet, respectively. The dairy industry should take advantage of the milk production during grazing periods from which high quality products may be obtained.