EMBOSS Administrator's Guide: Bioinformatics Software Management

Alan J. Bleasby; Jon C. Ison; Peter M. Rice

doi:10.1017/CBO9781139151399

EMBOSS Administrator's Guide

Bioinformatics Software Management

The European Molecular Biology Open Software Suite (EMBOSS) is a high quality package of open source software tools for molecular biology. It includes over 200 applications integrated with a range of popular third party software packages under a consistent and powerful command line interface. The tools are available from a wide range of graphical interfaces, including easy to use web interfaces and powerful workflow software.The EMBOSS Administrator's Guide is the official, definitive and comprehensive guide to EMBOSS installation and maintenance:Find all the information needed to configure, install and maintain EMBOSS, including recent additions for version 6.2Step-by-step instructions with real-world examples - saves readers time and helps them avoid the pitfalls on all the common platformsIn-depth reference to database configuration - learn how to set up and use databases under EMBOSSIncludes EMBOSS Frequently Asked Questions (FAQ) with answers - quickly find solutions to common problems

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EMBOSS Administrator's Guide

Bioinformatics Software Management

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Frontmatter
pp i-iv

Contents
pp v-viii

Acknowledgements
pp ix-x

Preface
pp xi-xiii

Conventions
pp xiv-xvi

Welcome to the EMBOSS Administrator’s Guide
pp xvii-xviii

1 - Building EMBOSS
pp 1-52

2 - Building EMBASSY
pp 53-64

3 - Building Jemboss
pp 65-91

4 - Databases
pp 92-132

Appendix A - Resources
pp 133-134

Appendix B - EMBOSS Frequently Asked Questions
pp 135-151

Index
pp 152-155

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EMBOSS Administrator's Guide

Bioinformatics Software Management

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