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1.L Plym Forshell , M Wierup . Salmonella contamination: a significant challenge to the global marketing of animal food products. Revue Scientifique et Technique 2006; 25: 541–554.
2.PS Mead , Food related illness and death in the United States. Emerging Infectious Diseases 1999; 5: 607–625.
3.AC Voetsch , FoodNet estimate of the burden of illness caused by nontyphoidal Salmonella infections in the United States. Clinical Infectious Diseases 2004; 38: 127–134.
8.A Gupta , Emergence of multidrug-resistant Salmonella enterica serotype Newport infections resistant to expanded-spectrum cephalosporins in the United States. Journal of Infectious Diseases 2003; 188: 1707–1716.
12.EM Ribot , Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathogens and Disease 2006; 3: 59–67.
13.S Porwollik , Characterization of Salmonella enterica subspecies I genovars by use of microarray. Journal of Bacteriology 2004; 186: 5883–5898.
14.K Chan , Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray. Journal of Bacteriology 2003; 185: 553–563.
15.MF Anjum , Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray. Infection and Immunity 2005; 73: 7894–7905.
16.A Lim , Shotgun optical maps of the whole Escherichia coli O157:H7 genome. Genome Research 2001; 11: 1584–1593.
18.S Zhou , Single-molecule approach to bacterial genomic comparisons via optical mapping. Journal of Bacteriology 2004; 186: 7773–7782.
19.APHM Hermans , Identification of novel Salmonella enterica serovar Typhimurium DT104 specific prophage and nonprophage chromosomal sequences among serovar Typhimurium Isolates by genomic subtractive hybridization. Applied and Environmental Microbiology 2005; 71: 4979–4985.
20.FJ Cooke , Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates. Journal of Clinical Microbiology 2007; 45: 2590–2598.
21.D Boyd , Complete nucleotide sequence of a 43-kilobase genomic island associated with the multidrug resistance region of Salmonella enterica serovar Typhimurium DT104 and its identification in phage type DT120 and serovar Agona. Journal of Bacteriology 2001; 183: 5725–5732.
22.H Brüssow , C Canchaya , WD Hardt . Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiology and Molecular Biology Reviews 2004; 68: 560–602.
24.Z Pan , Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport. Microbiology 2009; 155: 3200–3213.
25.DA Boyd , Salmonella genomic island 1 (SGI1), variant SGI1-I, and new variant SGI1-O in Proteus mirabilis clinical and food isolates from China. Antimicrobial Agents and Chemotherapy 2008; 52: 340–344.
26.RS Levings , SGI2, a relative of Salmonella genomic island SGI1 with an independent origin. Antimicrobial Agents and Chemotherapy 2008; 52: 2529–2537.
27.MR Mulvey , The genetics of Salmonella genomic island 1. Microbes and Infection 2006; 8: 1915–1922.
28.B Doublet , Secondary chromosomal attachment site and tandem integration of the mobilizable Salmonella genomic island 1. PLoS ONE 2008; 3: e2060c.
29.MR Brown , A Kornberg . Inorganic polyphosphate in the origin and survival of species. Proceedings of the National Academy of Sciences USA 2004; 101: 16085–16087.
30.M Price-Carter , Polyphosphate kinase protects Salmonella enterica from weak organic acid stress. Journal of Bacteriology 2005; 187: 3088–3099.
31.A Kuroda , Inorganic polyphosphate kinase is required to stimulate protein degradation and for adaptation to amino acid starvation in Escherichia coli. Proceedings of the National Academy of Sciences USA 1999; 96: 14264–14269.
32.WS Jermyn , EF Boyd . Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates. Microbiology 2002; 148: 3681–3693.
33.N Figueroa-Bossi , Variable assortment of prophages provides a transferable repertoire of pathogenic determinants in Salmonella. Molecular Microbiology 2001; 39: 260–271.
34.G Wu , Epidemic multidrug-resistant (MDR-AmpC) Salmonella enterica serovar Newport strains contain three phage regions and a MDR resistance plasmid. Environmental Microbiology Reports 2009; 2: 228–235.
35.N Figueroa-Bossi , L Bossi . Inducible prophages contribute to Salmonella virulence in mice. Molecular Microbiology 1999; 33: 167–176.
36.G Jubelin , CpxR/OmpR interplay regulates curli gene expression in response to osmolarity in Escherichia coli. Journal of Bacteriology 2005; 187: 2038–2049.
37.S Sun , Contribution of gene amplification to evolution of increased antibiotic resistance in Salmonella Typhimurium. Genetics 2009; 182: 1183–1195.
38.S Humphreys , Role of the two-component regulator CpxAR in the virulence of Salmonella enterica serotype Typhimurium. Infection and Immunity 2004; 72: 4654–4661.
40.R Lan , PR Reeves , S Octavia . Population structure, origins and evolution of major Salmonella enterica clones. Infection, Genetics and Evolution 2009; 9: 996–1005.
42.NR Thomson , Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. Genome Research 2008; 18: 1624–1637.
43.M McClelland , Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. Nature 2001; 413: 852–856.
47.CH Chiu , The genome sequence of Salmonella enterica serovar Choleraesuis, a highly invasive and resistant zoonotic pathogen. Nucleic Acids Research 2005; 33: 1690–1698.
49.KE Holt , Multidrug-resistant Salmonella enterica serovar Paratyphi A harbors IncHI1 plasmids similar to those found in serovar Typhi. Journal of Bacteriology 2007; 189: 4257–4264.
50.M McClelland , Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid. Nature Genetics 2004; 36: 1268–1274.
51.W Deng , Comparative genomics of Salmonella enterica serovar Typhi strains Ty2 and CT18. Journal of Bacteriology 2003; 185: 2330–2337.
52.J Parkhill , Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18. Nature 2001; 413: 848–852.