de Rezende Neves, Haroldo Henrique Carvalheiro, Roberto and de Queiroz, Sandra Aidar 2018. Trait-specific long-term consequences of genomic selection in beef cattle. Genetica, Vol. 146, Issue. 1, p. 85.
Li, Yan-He and Wang, Han-Ping 2017. Advances of genotyping-by-sequencing in fisheries and aquaculture. Reviews in Fish Biology and Fisheries, Vol. 27, Issue. 3, p. 535.
de Sousa, Regivaldo Vieira da Silva Cardoso, Célia Regina Butzke, Guilberth Dode, Margot Alves Nunes Rumpf, Rodolfo and Franco, Maurício Machaim 2017. Biopsy of bovine embryos produced in vivo and in vitro does not affect pregnancy rates. Theriogenology, Vol. 90, p. 25.
Tenghe, A.M.M. Bouwman, A.C. Berglund, B. Strandberg, E. de Koning, D.J. and Veerkamp, R.F. 2016. Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle. Journal of Dairy Science, Vol. 99, Issue. 7, p. 5470.
Sarup, Pernille Jensen, Just Ostersen, Tage Henryon, Mark and Sørensen, Peter 2016. Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs. BMC Genetics, Vol. 17, Issue. 1,
Roorkiwal, Manish Rathore, Abhishek Das, Roma R. Singh, Muneendra K. Jain, Ankit Srinivasan, Samineni Gaur, Pooran M. Chellapilla, Bharadwaj Tripathi, Shailesh Li, Yongle Hickey, John M. Lorenz, Aaron Sutton, Tim Crossa, Jose Jannink, Jean-Luc and Varshney, Rajeev K. 2016. Genome-Enabled Prediction Models for Yield Related Traits in Chickpea. Frontiers in Plant Science, Vol. 7,
Isik, Fikret Bartholomé, Jérôme Farjat, Alfredo Chancerel, Emilie Raffin, Annie Sanchez, Leopoldo Plomion, Christophe and Bouffier, Laurent 2016. Genomic selection in maritime pine. Plant Science, Vol. 242, p. 108.
Nonneman, Dan J. Schneider, James F. Lents, Clay A. Wiedmann, Ralph T. Vallet, Jeffrey L. and Rohrer, Gary A. 2016. Genome-wide association and identification of candidate genes for age at puberty in swine. BMC Genetics, Vol. 17, Issue. 1,
Veerkamp, Roel F. Bouwman, Aniek C. Schrooten, Chris and Calus, Mario P. L. 2016. Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein–Friesian cattle. Genetics Selection Evolution, Vol. 48, Issue. 1,
Lee, Seung Hwan Cho, Yong Min Lee, Jun Heon and Oh, Seong Jong 2015. Implementation of genomic selection in Hanwoo breeding program. Korean Journal of Agricultural Science, Vol. 42, Issue. 4, p. 397.
Tempelman, Robert J. 2015. Statistical and Computational Challenges in Whole Genome Prediction and Genome-Wide Association Analyses for Plant and Animal Breeding. Journal of Agricultural, Biological, and Environmental Statistics, Vol. 20, Issue. 4, p. 442.
van Binsbergen, Rianne Calus, Mario P. L. Bink, Marco C. A. M. van Eeuwijk, Fred A. Schrooten, Chris and Veerkamp, Roel F. 2015. Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle. Genetics Selection Evolution, Vol. 47, Issue. 1,
Grossi, Daniela do Amaral Buzanskas, Marcos Eli Grupioni, Natalia Vinhal de Paz, Claudia Cristina Paro Regitano, Luciana Correia de Almeida de Alencar, Maurício Mello Schenkel, Flávio Schramm and Munari, Danísio Prado 2015. Effect of IGF1, GH, and PIT1 markers on the genetic parameters of growth and reproduction traits in Canchim cattle. Molecular Biology Reports, Vol. 42, Issue. 1, p. 245.
Zhao, Yusheng Mette, Michael F. Reif, Jochen C. and Ordon, F. 2015. Genomic selection in hybrid breeding. Plant Breeding, Vol. 134, Issue. 1, p. 1.
Azevedo, Camila Ferreira de Resende, Marcos Deon Vilela e Silva, Fabyano Fonseca Viana, José Marcelo Soriano Valente, Magno Sávio Ferreira Resende, Márcio Fernando Ribeiro and Muñoz, Patricio 2015. Ridge, Lasso and Bayesian additive-dominance genomic models. BMC Genetics, Vol. 16, Issue. 1,
Li, Yi and Kim, Jong-Joo 2015. Effective Population Size and Signatures of Selection Using Bovine 50K SNP Chips in Korean Native Cattle (Hanwoo). Evolutionary Bioinformatics, Vol. 11, p. EBO.S24359.
Houston, Ross D Taggart, John B Cézard, Timothé Bekaert, Michaël Lowe, Natalie R Downing, Alison Talbot, Richard Bishop, Stephen C Archibald, Alan L Bron, James E Penman, David J Davassi, Alessandro Brew, Fiona Tinch, Alan E Gharbi, Karim and Hamilton, Alastair 2014. Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar). BMC Genomics, Vol. 15, Issue. 1, p. 90.
Van Eenennaam, Alison L. Weigel, Kent A. Young, Amy E. Cleveland, Matthew A. and Dekkers, Jack C.M. 2014. Applied Animal Genomics: Results from the Field. Annual Review of Animal Biosciences, Vol. 2, Issue. 1, p. 105.
Couldrey, Christine Brauning, Rudiger Bracegirdle, Jeremy Maclean, Paul Henderson, Harold V. McEwan, John C. and Niemann, Heiner 2014. Genome-Wide DNA Methylation Patterns and Transcription Analysis in Sheep Muscle. PLoS ONE, Vol. 9, Issue. 7, p. e101853.
Nimmakayala, Padma Levi, Amnon Abburi, Lavanya Abburi, Venkata Tomason, Yan R Saminathan, Thangasamy Vajja, Venkata Malkaram, Sridhar Reddy, Rishi Wehner, Todd C Mitchell, Sharon E and Reddy, Umesh K 2014. Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in cultivated watermelon. BMC Genomics, Vol. 15, Issue. 1, p. 767.
Most traits of economic importance in livestock are either quantitative or complex. Despite considerable efforts, there has been only limited success in identifying the polymorphisms that cause variation in these traits. Nevertheless, selection based on estimated breeding values (BVs), calculated from data on phenotypic performance and pedigree has been very successful. Genomic tools, such as single nucleotide polymorphism (SNP) chips, have led to a new method of selection called ‘genomic selection’ in which dense SNP genotypes covering the genome are used to predict the BV. In this review we consider the statistical methodology for estimating BVs from SNP data, factors affecting the accuracy, the long-term response to genomic selection and the design of breeding programmes including the management of inbreeding.
Email your librarian or administrator to recommend adding this journal to your organisation's collection.
Full text views reflects the number of PDF downloads, PDFs sent to Google Drive, Dropbox and Kindle and HTML full text views.
* Views captured on Cambridge Core between September 2016 - 20th March 2018. This data will be updated every 24 hours.