Hostname: page-component-8448b6f56d-wq2xx Total loading time: 0 Render date: 2024-04-24T06:28:01.976Z Has data issue: false hasContentIssue false
  • English
  • Français

Genomics of plant genetic resources: an introduction

Published online by Cambridge University Press:  15 June 2011

Roberto Tuberosa ,
Andreas Graner  and
Rajeev K. Varshney
Roberto Tuberosa*
Affiliation:
Department of Agroenvironmental Science and Technology, Viale Fanin 44, 40127Bologna, Italy
Andreas Graner
Affiliation:
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstraße 3, D-06466Gatersleben, Germany
Rajeev K. Varshney
Affiliation:
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad 502 324, Andhra Pradesh, India
*
*Corresponding author. E-mail: roberto.tuberosa@unibo.it
Get access Rights & Permissions [Opens in a new window]

Abstract

An abstract is not available for this content so a preview has been provided. Please use the Get access link above for information on how to access this content.
Image of the first page of this content. For PDF version, please use the ‘Save PDF’ preceeding this image.'
Type
Research Article
Information
Plant Genetic Resources , Volume 9 , Issue 2 , July 2011 , pp. 151 - 154
Copyright
Copyright © NIAB 2011

Access options

Get access to the full version of this content by using one of the access options below. (Log in options will check for institutional or personal access. Content may require purchase if you do not have access.)

References

Akhunov, E, Nicolet, C and Dvorak, J (2009) Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theoretical and Applied Genetics 119: 507–517.CrossRefGoogle ScholarPubMed
Berard, A, Le Paslier, MC, Dardevet, M, Exbrayat-Vinson, F, Bonnin, I, Cenci, A, Haudry, A, Brunel, D and Ravel, C (2009) High-throughput single nucleotide polymorphism genotyping in wheat. (Triticum spp.). Plant Biotechnology Journal 7: 364–374.CrossRefGoogle ScholarPubMed
Bernardo, R (2009) Genomewide selection for rapid introgression of exotic germplasm in maize. Crop Science 49: 419–425.CrossRefGoogle Scholar
Bolot, S, Abrouk, M, Masood-Quraishi, U, Stein, N, Messing, J, Feuillet, C and Salse, J (2009) The ‘inner circle’ of the cereal genomes. Current Opinion in Plant Biology 12: 119–125.CrossRefGoogle ScholarPubMed
Collins, NC, Tardieu, F and Tuberosa, R (2008) Quantitative trait loci and crop performance under abiotic stress: where do we stand? Plant Physiology 147: 469–486.CrossRefGoogle ScholarPubMed
Edwards, KJ, Reid, AL, Coghill, JA, Berry, ST and Barker, GLA (2009) Multiplex single nucleotide polymorphism (SNP)-based genotyping in allohexaploid wheat using padlock probes. Plant Biotechnology Journal 7: 375–390.CrossRefGoogle ScholarPubMed
Ejeta, G and Knoll, JE (2007) Marker-assisted selection in sorghum. In: Varshney, RK and Tuberosa, R (eds) Genomics-assisted Crop Improvement, vol. 2. Houten: Springer, pp. 187–206.CrossRefGoogle Scholar
Ersoz, ES, Yu, J and Buckler, ES (2007) Applications of linkage disequilibrium and association mapping. In: Varshney, RK and Tuberosa, R (eds) Genomics-assisted Crop Improvement, Vol. 1: Genomics Approaches and Platforms. Houten: Springer, pp. 97–120.CrossRefGoogle Scholar
Feuillet, C, Langridge, P and Waugh, R (2008) Cereal breeding takes a walk on the wild side. Trends in Genetics 24: 24–23.CrossRefGoogle ScholarPubMed
Forrest, ARR and Carninci, P (2009) Whole genome transcriptome analysis. RNA Biology 6: 107–112.CrossRefGoogle ScholarPubMed
Ganal, MW and Röder, MS (2007) Microsatellite and SNP markers in wheat breeding. In: Varshney, RK and Tuberosa, R (eds) Genomics-assisted Crop Improvement, Vol. 2: Genomics Applications in Crops. Houten: Springer, pp. 1–24.Google Scholar
Glaszmann, JC, Kilian, B, Upadhyaya, HD and Varshney, RK (2010) Accessing genetic diversity for crop improvement. Current Opinion in Plant Biology 13: 167–173.CrossRefGoogle ScholarPubMed
Gupta, PK and Langridge, P (2010) Marker-assisted wheat breeding: present status and future possibilities. Molecular Breeding 26: 145–161.CrossRefGoogle Scholar
Gupta, PK, Rustgi, S and Mir, RR (2008) Array-based high-throughput DNA markers for crop improvement. Heredity 101: 5–18.CrossRefGoogle ScholarPubMed
Hayden, MJ, Tabone, TL, Nguyen, TM, Coventry, S, Keiper, FJ, Fox, RL, Chalmers, KJ, Mather, DE and Eglinton, JK (2010) An informative set of SNP markers for molecular characterisation of Australian barley germplasm. Crop and Pasture Science 61: 70–83.CrossRefGoogle Scholar
Kovach, MJ and McCouch, SR (2008) Leveraging natural diversity: back through the bottleneck. Current Opinion in Plant Biology 11: 193–200.CrossRefGoogle ScholarPubMed
Langridge, P and Fleury, D (2011) Making the most of ‘omics’ for crop breeding. Trends in Biotechnology 29: 33–40.CrossRefGoogle ScholarPubMed
Maccaferri, M, Sanguineti, MC, Xie, C, Smith, JSC and Tuberosa, R (2007) Relationships among durum wheat accessions. II. A comparison of molecular and pedigree information. Genome 50: 385–399.CrossRefGoogle Scholar
Maccaferri, M, Sanguineti, MC, Corneti, S, Ortega, JLA, Ben Salem, M, Bort, J, DeAmbrogio, E, del Moral, LFG, Demontis, A, El-Ahmed, A, et al. (2008) Quantitative trait loci for grain yield and adaptation of durum wheat (Triticum durum Desf.) across a wide range of water availability. Genetics 178: 489–511.CrossRefGoogle ScholarPubMed
Maccaferri, M, Sanguineti, MC, Demontis, A, El-Ahmed, A, Garcia del Moral, L, Maalouf, F, Nachit, M, Nserallah, N, Ouabbou, H, Rhouma, S, Royo, C, Villegas, D and Tuberosa, R (2011) Association mapping in durum wheat grown across a broad range of water regimes. Journal of Experimental Botany 62: 409–438.CrossRefGoogle ScholarPubMed
Magalhaes, JV, Liu, J, Guimaraes, CT, Lana, UGP, Alves, VMC, Wang, YH, Schaffert, RE, Hoekenga, OA, Pineros, MA, Shaff, JE, et al. (2007) A gene in the multidrug and toxic compound extrusion (MATE) family confers aluminum tolerance in sorghum. Nature Genetics 39: 1156–1161.CrossRefGoogle ScholarPubMed
McNally, KL, Childs, KL, Bohnert, R, Davidson, RM, Zhao, K, Ulat, VJ, Zeller, G, Clark, RM, Hoen, DR, Bureau, TE, Stokowski, R, Ballinger, DG, Frazer, KA, Cox, DR, Padhukasahasram, B, Bustamante, CD, Detlef Weigel, D, Mackill, DJ, Bruskiewich, RM, Rätsch, G, Buell, CR, Leung, H and Leach, JE (2009) Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America 106: 12273–12278.CrossRefGoogle ScholarPubMed
Parent, B, Suard, B, Serraj, R and Tardieu, F (2010) Rice leaf growth and water potential are resilient to evaporative demand and soil water deficit once the effects of root system are neutralized. Plant Cell and Environment 33: 1256–1267.CrossRefGoogle ScholarPubMed
Pietsch, C, Sreenivasulu, N, Wobus, U and Roder, MS (2009) Linkage mapping of putative regulator genes of barley grain development characterized by expression profiling. BMC Plant Biology 9: 4.CrossRefGoogle ScholarPubMed
Rafalski, JA (2010) Association genetics in crop improvement. Current Opinion in Plant Biology 13: 174–180.CrossRefGoogle ScholarPubMed
Ribaut, JM, de Vicente, MC and Delannay, X (2010) Molecular breeding in developing countries: challenges and perspectives. Current Opinion in Plant Biology 13: 213–218.CrossRefGoogle ScholarPubMed
Salvi, S and Tuberosa, R (2007) Cloning QTLs in plants. In: Varshney, RK and Tuberosa, R (eds) Genomics-assisted Crop Improvement, Vol. 1: Genomics Approaches and Platforms. Houten: Springer, pp. 207–226.CrossRefGoogle Scholar
Salvi, S, Sponza, G, Morgante, M, Tomes, D, Niu, X, Fengler, KA, Meeley, R, Ananiev, EV, Svitashev, S, Bruggemann, E, Li, B, Hainey, CF, Radovic, S, Zaina, G, Rafalski, JA, Tingey, SV, Miao, GH, Phillips, RL and Tuberosa, R (2007) Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize. Proceedings of the National Academy of Sciences of the United States of America 104: 11376–11381.CrossRefGoogle ScholarPubMed
Sestili, F, Botticella, E, Bedo, Z, Phillips, A and Lafiandra, D (2010) Production of novel allelic variation for genes involved in starch biosynthesis through mutagenesis. Molecular Breeding 25: 145–154.CrossRefGoogle Scholar
Talamè, V, Bovina, R, Sanguineti, MC, Tuberosa, R, Lundqvist, U and Salvi, S (2008) TILLMore, a resource for the discovery of chemically induced mutants in barley. Plant Biotechnology Journal 6: 477–485.CrossRefGoogle ScholarPubMed
Tamura, K and Yonemaru, J (2010) Next-generation sequencing for comparative transcriptomics of perennial ryegrass (Lolium perenne L.) and meadow fescue (Festuca pratensis Huds.) during cold acclimation. Grassland Science 56: 230–239.CrossRefGoogle Scholar
Tardieu, F and Tuberosa, R (2010) Dissection and modelling of abiotic stress tolerance in plants. Current Opinion in Plant Biology 13: 206–212.CrossRefGoogle ScholarPubMed
Tester, M and Langridge, P (2010) Breeding technologies to increase crop production in a changing world. Science 327: 818–822.CrossRefGoogle Scholar
Trebbi, D, Maccaferri, M, de Heer, P, Sørensen, A, van der Vossen, E, Andries, G, Giuliani, S, Salvi, S, Sanguineti, MC, Massi, A and Tuberosa, R (2011) High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.). Theoretical Applied Genetics. DOI:10.1007/s00122-011-1607-7.Google Scholar
Tuberosa, R, Gill, BS and Quarrie, SA (2002) Cereal genomics: ushering in a brave new world. Plant Molecular Biology 48: 445–449.CrossRefGoogle Scholar
Varshney, RK and Tuberosa, R (2007) Genomics-assisted Crop Improvement, Vol. 1: Genomics Approaches and Platforms, p. 386 and Vol. 2: Genomics Applications in Crops, p. 516. Houten: Springer.CrossRefGoogle Scholar
Varshney, RK, Glaszmann, J-C, Leung, H and Ribaut, JM (2010) More genomic resources for less-studied crops. Trends Biotechnology 28: 452–460.CrossRefGoogle ScholarPubMed
Varshney, RK, Graner, A and Sorrells, ME (2005) Genomics-assisted breeding for crop improvement. Trends in Plant Science 10: 621–630.CrossRefGoogle ScholarPubMed
Varshney, RK, Nayak, SN, May, GD and Jackson, SA (2009) Next-generation sequencing technologies and their implications for crop genetics and breeding. Trends in Biotechnology 27: 522–530.CrossRefGoogle ScholarPubMed
Waugh, R, Jannink, JL, Muehlbauer, GJ and Ramsay, L (2009) The emergence of whole genome association scans in barley. Current Opinion in Plant Biology 12: 218–222.CrossRefGoogle ScholarPubMed
Xu, Y (2010) Molecular Plant Breeding. Wallingford: CABI.CrossRefGoogle Scholar
Yadav, RS, Sehgal, D and Vadez, V (2011) Using genetic mapping and genomics approaches in understanding and improving drought tolerance in pearl millet. Journal of Experimental Botany 62: 397–408.CrossRefGoogle ScholarPubMed
Yan, JB, Yang, XH, Shah, T, Sanchez-Villeda, H, Li, JS, Warburton, M, Zhou, Y, Crouch, JH and Xu, Y (2010) High-throughput SNP genotyping with the GoldenGate assay in maize. Molecular Breeding 25: 441–451.CrossRefGoogle Scholar
Yano, M and Tuberosa, R (2009) Genome studies and molecular genetics-from sequence to crops: genomics comes of age. Current Opinion in Plant Biology 12: 103–106.CrossRefGoogle ScholarPubMed