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User-Centric Process of Designing a Molecular & Cellular Query Interface for Biomedical Research

Published online by Cambridge University Press:  26 May 2022

T. S. Liaw*
Affiliation:
Harvard Medical School, United States of America
N. Gehlenborg
Affiliation:
Harvard Medical School, United States of America

Abstract

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There is a growing demand for the adoption of user-centric design processes for the development of computational biology software as usability becomes a major concern. Our team develops interfaces for a human biomolecular data portal with user-centered design, so we present a case study of the design process of a molecular and cellular query to emphasize the importance of user-centric design and reveal the complications that arise in a complex software development environment. The study follows the design process from user requirement gathering to the prototyping of a minimum viable product.

Type
Article
Creative Commons
Creative Common License - CCCreative Common License - BYCreative Common License - NCCreative Common License - ND
This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is unaltered and is properly cited. The written permission of Cambridge University Press must be obtained for commercial re-use or in order to create a derivative work.
Copyright
The Author(s), 2022.

References

Bolchini, D., Finkelstein, A., Perrone, V. and Nagl, S. (2009), “Better bioinformatics through usability analysis”, Bioinformatics, Vol. 25 No. 3, pp. 406412. 10.1093/bioinformatics/btn633CrossRefGoogle ScholarPubMed
Chilana, P.K., Wobbrock, J.O. and Ko, A.J. (2010), “Understanding Usability Practices in Complex Domains”, In Proceedings of the SIGCHI Conference on Human Factors in Computing System (CHI ’10), Association for Computing Machinery, New York, pp. 23372346. 10.1145/1753326.1753678Google Scholar
Cooper, A. (1999), “The Inmates are Running the Asylum”, In: Arend, U., Eberleh, E. and Pitschke, K. (Eds.), Software Ergonomie ’99. Berichte des German Chapter of the ACM, Vieweg+Teubner Verlag, Wiesbaden. https://doi.org./10.1007/978-3-322-99786-9_1Google Scholar
Dopp, A., Parisi, K., Munson, S. and Lyon, A. (2019), “A glossary of user-centered design strategies for implementation experts”, Translational Behavioral Medicine, Vol. 9 No. 6, pp. 10571064. 10.1093/tbm/iby119Google ScholarPubMed
Figma, software. (2016). Figma, Inc.Google Scholar
Fox, D., Sillito, J. and Maurer, F. (2008), “Agile Methods and User-Centered Design: How These Two Methodologies are Being Successfully Integrated in Industry”, Agile 2008 Conference, IEEE, Toronto, pp. 6372. 10.1109/Agile.2008.78Google Scholar
Ghazali, M., Matt Ariffin, N. A. and Omar, R. (2014), “User centered design practices in healthcare: A systematic review”, 2014 3rd International Conference on User Science and Engineering (i-USEr), IEEE, Shah Alam, pp. 9196. 10.1109/IUSER.2014.7002683Google Scholar
Hearst, M. A. (2009), Search User Interfaces, Cambridge University Press, New York. 10.1017/CBO9781139644082Google Scholar
HuBMAP Consortium. (2019), “The human body at cellular resolution: the NIH Human Biomolecular Atlas Program”, Nature, Vol. 574 No. 7777, pp. 187192. 10.1038/s41586-019-1629-xGoogle Scholar
Iñiguez-Jarrin, C., Panach, J.I. and Pastor, O. (2019), “User-Centered Design for Biomedical Search User Interfaces”, In: Andersson, B., Johansson, B., Barry, C., Lang, M., Linger, H., et al. (Eds.), Advances in Information Systems Development. Springer, Lund, Sweden, pp. 247264. 10.1007/978-3-030-22993-1_14CrossRefGoogle Scholar
Lack, R. (2007), “The Importance of User-Centered Design: Exploring Findings and Methods”, Journal of Archival Organization, Vol. 4 No. 1-2, pp. 6986. 10.1300/J201v04n01_05Google Scholar
List, M., Ebert, P. and Albrecht, F. (2017), “Ten Simple Rules for Developing Usable Software in Computational Biology”, PLoS Computational Biology, Vol. 13 No. 1. 10.1371/journal.pcbi.1005265CrossRefGoogle ScholarPubMed
Macaulay, C., Sloan, D., Jiang, X., Forbes, P., Loynton, S., et al. . (2009), “Usability and User-Centered Design in Scientific Software Development”, IEEE Software, Vol. 26 No. 1, pp. 96102. 10.1109/MS.2009.27Google Scholar
Mangul, S., Martin, L.S., Eskin, E. and Blekhman, R. (2019), “Improving the usability and archival stability of bioinformatics software”, Genome Biology, Vol. 20 No. 47. 10.1186/s13059-019-1649-8Google ScholarPubMed
Pavelin, K., Cham, J.A., de Matos, P., Brooksbank, C., Cameron, G., et al. . (2012), “Bioinformatics Meets User-Centred Design: A Perspective”, PLoS Computational Biology, Vol 8. No. 7. 10.1371/journal.pcbi.1002554CrossRefGoogle ScholarPubMed
Ritter, F.E., Baxter, G.D. and Churchill, E.F. (2014), “User-Centered Systems Design: A Brief History”, In: Foundations for Designing User-Centered Systems, Springer, London, pp. 3354. 10.1007/978-1-4471-5134-0_2Google Scholar
Thorpe, J. R., Forchhammer, B.H. and Maier, A. (2016), “Needs Elicitation for Novel Pervasive Healthcare Technology”, Proceedings of the DESIGN 2016 14th International Design Conference, The Design Society, Dubrovnik, pp. 19471956.Google Scholar
Walden, A., Garvin, L., Smerek, M. and Johnson, C. (2020), “User-centered design principles in the development of clinical research tools”, Clinical Trials, Vol. 17 No. 6, pp. 703711. 10.1177/1740774520946314Google ScholarPubMed
Wallach, D. and Scholz, S.C. (2012), “User-Centered Design: Why and How to Put Users First in Software Development”, In: Maedche, A., Botzenhardt, A. and Neer, L. (Eds.), Management for Professionals, Springer, Berlin, pp. 1138. 10.1007/978-3-642-31371-4_2Google Scholar
Weston, C., Gandell, T., Beauchamp, J., McAlpine, L., Wiseman, C. and Beauchamp, C. (2001). “Analyzing Interview Data: The Development and Evolution of a Coding System”, Qualitative Sociology, Vol. 24, pp. 381400. 10.1023/A:1010690908200Google Scholar