My purpose is to introduce a special issue of Seed Science Research devoted to papers resulting from material presented at Seed Ecology V held in Caeté, Brazil on 21–25 August 2016. An overview of the field of seed ecology is presented that includes a short summary of what I consider to be the eight basic subcategories of this field, and the five new areas of investigation that have developed as extensions and/or recombinations of basic areas. Seed ecology conferences allow researchers to communicate with each other and build new collaborative relationships. At Seed Ecology V, information was presented that related to each area of seed ecology. The nine papers in this special issue are a small sample of the information presented at the meeting, and each paper is briefly described and placed into one of the subcategories of seed ecology research.

Seed dispersal effectiveness (SDE) is a useful framework to explore the evolutionary and ecological consequences of seed dispersal to plant fitness. However, SDE is poorly studied in tropical open grasslands. Here, we studied both quantitative and qualitative components of SDE in two species of Miconia (Melastomataceae) from ferruginous campo rupestre, a vegetation highly threatened by mining activities. We determined fruit traits and fruit availability and found that fruits of both species are produced in times of resource scarcity at the study site. Based on the number of visits and the number of fruits removed per visit, we calculated the quantitative component of SDE for both species. Finally, we explored the qualitative component of SDE by means of a controlled experiment that simulated the effects of gut passage on seed germination. Bird species differed strongly in the quantitative component of SDE. Gut passage did not affect germination compared with hand-extracted seeds, except for a minor negative effect on germination time in M. pepericarpa. However, seeds within intact fruits showed lower germination percentages compared with hand-extracted seeds. Our data indicate that Miconia species from ferruginous campo rupestre are visited by a diverse assemblage of generalist birds that differ in quantitative, but not qualitative, seed dispersal effectiveness. We argue that planting Miconia species can overcome seed limitation in degraded areas and thus assist ecological restoration after mining abandonment.

Information from a field perspective on temperature thresholds related to physical dormancy (PY) alleviation and seed resistance to high temperatures of fire is crucial to disentangle fire- and non-fire-related germination cues. We investigated seed germination and survival of four leguminous species from a frequently burned open Neotropical savanna in Central Brazil. Three field experiments were conducted according to seed location in/on the soil: (1) fire effects on exposed seeds; (2) fire effects on buried seeds; and (3) effects of temperature fluctuations on exposed seeds in gaps and shaded microsites in vegetation. After field treatments, seeds were tested for germination in the laboratory, together with the control (non-treated seeds). Fire effects on exposed seeds decreased viability in all species. However, germination of buried Mimosa leiocephala seeds was enhanced by fire in an increased fuel load treatment, in which we doubled the amount of above-ground biomass. Germination of two species (M. leiocephala and Harpalyce brasiliana) was enhanced with temperature fluctuation in gaps, but this condition also decreased seed viability. Our main conclusions are: (1) most seeds died when exposed directly to fire; (2) PY could be alleviated during hotter fires when seeds were buried in the soil; and (3) daily temperature fluctuations in gaps also broke PY of seeds on the soil surface, so many seeds could be recruited or die before being incorporated into the soil seed banks. Thus seed dormancy-break and germination of legumes from Cerrado open savannas seem to be driven by both fire and temperature fluctuations.

A cleistogamous species consists of individuals that produce both chasmogamous (open, CH) and cleistogamous (permanently closed, CL) flowers, which facilitates a mixed-mating system. In contrast to what one might expect, CL (obligately selfed) seeds and the plants derived from them can be more fit than CH (potentially outcrossed) seeds and the plants they give rise to. Our aim was to review some theoretical aspects of mixed mating in relation to retention of both CH and CL in cleistogamous species and to determine if data on germination support the notion that CL is advantageous over that of CH. Based on germination (or seedling emergence) of CH vs CL seeds in 29 species in 21 genera and 11 families of monocots and eudicots, CL seeds germinated better in 107 and equally well as in 64 of 252 case studies as CH seeds (67.9%), and the (CH < CL):(CH > CL) ratio was 107/81 (1.32). We conclude that our study lends support to the notion that production of CL seeds by cleistogamous species is advantageous over that of CH seeds. Retention of CH by CL species may be due to the need to prevent complete selfing (s= 1.0) and thus total inbreeding depression (δ), which theory predicts would decrease reproductive success. Some caveats concerning the results of comparative studies on the germination biology of CH vs CL seeds of amphicarpic sensu stricto Fabaceae species and Commelina benghalensis and the aerial cleistogamous grass Danthonia spicata are discussed.

Seed germination is vital for persistence of many plant species, and is linked to local environmental conditions. Small increases in temperature during this critical life history transition may threaten species by altering germination timing and success. Such changes in turn may influence population dynamics, community composition and the geographic distributions of species. In this investigation, a bi-directional temperature gradient plate was used to profile thermal constraints for germination in 26 common, threatened and geographically restricted Eucalyptus species (Myrtaceae) from southern Western Australia. These observed data were used to populate models to predict optimum germination responses (mean time to germination, germination timing and success) under current (1950–2000 averages) and future (2070 high greenhouse gas emission climate scenario) mean monthly minimum and maximum temperatures. Many species demonstrated wide physiological tolerance for high germination temperatures and an ability to germinate outside current and forecast future autumn–winter wet season temperatures, suggesting that climatic distribution is a poor proxy for thermal tolerance for Eucalyptus seed germination. Germination for some species is predicted to decline under forecast conditions, but the majority will maintain or improve germination particularly during the cooler winter months of the year. Although thermal tolerance may benefit persistence of many Eucalyptus species in southern Western Australia as warming becomes more severe, large rainfall declines are also forecast which may prove more detrimental to plant survival. Nonetheless, this framework has the potential to identify seed resilience to heat stress in an early life history phase and hence species vulnerability to one characteristic of forecast environmental change.

Understanding how plant traits interact with climate to determine plant niches is decisive for predicting climate change impacts. While lifespan and seed size modify the importance of germination timing, germination traits such as base temperature and base water potential directly translate climatic conditions into germination timing, impacting performance in later life stages. Yet we do not know how base temperature, base water potential, seed mass, lifespan and climate are related. We tested the relationships between base temperature and base water potential for germination, seed size and lifespan while controlling for bioclimatic regions. We also quantified the phylogenetic signal in germination traits and seed size using Pagel's λ. We used a worldwide data set of germination responses to temperature and moisture, seed size and lifespan of 240 seed plants from 49 families. Both germination temperature and moisture are negatively related to seed size. Annual plants show a negative relation between seed size and base water potential, whereas perennials display a negative relation between base temperature and seed mass. Pagel's λ highlighted the slow evolution of base temperature for germination, comparable to seed mass while base water potential was revealed to be labile. In the future, base water potential and seed mass can be used when moisture niches of plants are to be predicted. Lifespan, seed size and base temperature should be taken into account when analysing thermal limits of species distributions.

Eugenia stipitata occurs along rivers in Western Amazonia and produces berry-type fruits with economic potential. Its large recalcitrant (i.e. desiccation-intolerant) seeds have been proposed as a model to study seed stress response, as no apparent differentiation between the embryonic axis and the fused cotyledons are visible. Here, the longevity of submerged seeds was analysed with a view to understanding adaptive mechanisms to seasonal flooding. Submerged seeds began germinating after 2 months. After 1 year, 87 and 96% total germination was reached when seeds were submerged under a water column of 6 cm (where seedlings could emerge from under the water) and 26 cm (where seedlings could not reach the water surface), respectively. Seedling morphology was altered underwater, with short internodes and rudimentary leaf blades, and when submersion was terminated, seedlings transplanted to nursery conditions recovered a normal phenotype. Furthermore, when seedlings were detached from the seeds, the ‘resown’ seeds produced a second, normal seedling within 9 months. Concentrations of the antioxidant glutathione, which was measured as a stress marker, increased with submersion time in water. Seeds that had developed roots and shoots underwater had higher concentrations of glutathione disulphide than non-germinated seeds, suggesting that the flooding stress was more intense for seedlings than seeds, although more oxidizing cellular redox environments are also consistent with the conditions required for differentiation. Submergence underwater is recommended for storage of the recalcitrant seeds of E. stipitata for up to 1 year.

Light conditions provide important information about the best time and place for seedling establishment. Photoinhibition of seed germination (PISG), defined as the partial or complete suppression of germination under white light, has been interpreted as a physiological adaptation to avoid germination at or near the soil surface. This review is the first report of an all-inclusive, fully quantitative analysis of PISG in seed plants. Pertinent data available from the published literature for 301 taxa from 59 families and 27 orders were assessed. The association of PISG with several plant and seed traits allowed us to consider the adaptive significance of PISG in relation to plant life histories and the natural environments. As no gymnosperm has been found to be truly photoinhibited, it seems that PISG is apomorphic to flowering plants (especially monocots). Seeds of most taxa with PISG have a dark colour and intermediate mass, mostly in the range 1 to 27 mg. PISG is absent from humid tropical regions and from cold climates, but it is strongly associated with open, disturbed and dry habitats. An intriguing implication of PISG is the formation of a soil-surface seed bank. Taken together, these results clearly indicate that PISG is a physiological adaptation to avoid germination on the soil surface, where conditions are not suitable for seedling establishment. PISG is probably much more frequent in seed plants than previously thought. Thus, laboratory experiments should be conducted under well-characterized light and dark conditions.

Our previous study showed that smoke derived from alfalfa (Medicago sativa) caused different germination responses compared with that from prairie hay (Festuca hallii) and wheat straw (Triticum aestivum), but the mechanism remained unclear. In this study, we used Salad Bowl lettuce (Lactuca sativa) as a quick bioassay to trace the active compounds in each of these three smoke solutions. Column chromatography and high performance liquid chromatography (HPLC) were used to separate and identify active fractions. Seeds of four species from Fescue Prairie were primed for 24 h at room temperature in darkness using serial dilutions of separated active fractions, as well as karrikinolide (KAR1). After priming, seeds were dried at room temperature in darkness for 7 days and subsequently incubated at 10/0°C or 25/15°C in 12 h light–12 h dark or 24 h darkness for 49 days. KAR1 was in the smoke made from prairie hay, and wheat straw, but was absent in alfalfa smoke. Priming in KAR1 solutions increased germination of three native species. Priming in highly concentrated KAR1 reduced radicle length of Cirsium arvense, the only non-native species. Even though KAR1 has the potential to enhance regeneration of native species in the Fescue Prairie, KAR1 is not universally present in smoke derived from different plant materials. Unknown compound(s) in smoke derived from legumes remain to be identified.