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  • Mark Sutton (a1), Imran Rahman (a2) and Russell Garwood (a3)

Virtual paleontology is the study of fossils through three-dimensional digital visualizations; it represents a powerful and well-established set of tools for the analysis and dissemination of fossil data. Techniques are divisible into tomographic (i.e., slice-based) and surface-based types. Tomography has a long predigital history, but the recent explosion of virtual paleontology has resulted primarily from developments in X-ray computed tomography (CT), and of surface-based technologies (e.g., laser scanning). Destructive tomographic methods include forms of physical-optical tomography (e.g., serial grinding); these are powerful but problematic techniques. Focused Ion Beam (FIB) tomography is a modern alternative for microfossils; it is also destructive but is capable of extremely high resolutions. Nondestructive tomographic methods include the many forms of CT, which are the most widely used data-capture techniques at present, but are not universally applicable. Where CT is inappropriate, other nondestructive technologies (e.g., neutron tomography, magnetic resonance imaging, optical tomography) can prove suitable. Surface-based methods provide portable and convenient data capture for surface topography and texture, and might be appropriate when internal morphology is not of interest; technologies include laser scanning, photogrammetry, and mechanical digitization. Reconstruction methods that produce visualizations from raw data are many and various; selection of an appropriate workflow will depend on many factors, but is an important consideration that should be addressed prior to any study. The vast majority of three-dimensional fossils can now be studied using some form of virtual paleontology, and barriers to broader adaptation are being eroded. Technical issues regarding data sharing remain problematic. Technological developments continue; those promising tomographic recovery of compositional data are of particular relevance to paleontology.

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This list contains references from the content that can be linked to their source. For a full set of references and notes please see the PDF or HTML where available.

A.E. Albani , S. Bengtson , D.E. Canfield , A. Bekker , R. Macchiarelli , A. Mazurier , E.U. Hammarlund , P. Boulvais , J.-J. Dupuy , C. Fontaine , F.T. Fürsich , F. Gauthier-Lafaye , P. Janvier , E. Javaux , F. Ossa Ossa , A.-C. Pierson-Wickmann , A. Riboulleau , P. Sardini , D. Vachard , M. Whitehouse , and A. Meunier , 2010, Large colonial organisms with coordinated growth in oxygenated environments 2.1 Gyr ago: Nature, v. 466, p. 100104.

J.B. Antcliffe , and M.D. Brasier , 2011, Fossils with little relief: Using lasers to conserve, image, and analyse the Ediacara biota, in Laflamme, M., Schiffbauer, J.D., and Dornbos, S.Q., eds., Quantifying the Evolution of Early Life: Numerical Approaches to the Evaluation of Fossils and Ancient Ecosystems: Dordrecht, The Netherlands, Springer, p. 223240.

C. Ascaso , J. Wierzchos , J.C. Corral , R. López , and J. Alonso , 2003, New applications of light and electron microscopic techniques for the study of microbiological inclusions in amber: Journal of Paleontology, v. 77, p. 11821192.

K.T. Bates , F. Rarity , P.L. Manning , D. Hodgetts , B. Vial , O. Oms , A. Galobart , and R.L. Gawthorpe , 2008, High-resolution LiDAR and photogrammetric survey of the Fumanya dinosaur tracksites (Catalonia): Implications for the conservation and interpretation of geological heritage sites: Journal of the Geological Society of London, v. 165, p. 115127.

K.T. Bates , P.L. Manning , D. Hodgetts , and W.I. Sellers , 2009b, Estimating mass properties of dinosaurs using laser imaging and 3D computer modelling: PLoS ONE, v. 4(2), e4532, DOI: 10.1371/journal.pone.0004532.

O. Béthoux , J. McBride , and C. Maul , 2004, Surface laser scanning of fossil insect wings: Palaeontology, v. 47, p. 1319.

M.D. Brasier , J. Antcliffe , M. Saunders , and D. Wacey , 2015, Changing the picture of Earth’s earliest fossils (3.5–1.9Ga) with new approaches and new discoveries: Proceedings of the National Academy of Sciences, v. 112, p. 48594864.

D.E.G. Briggs , David J. Siveter , Derek J. Siveter , and M.D. Sutton , 2008, Virtual fossils from a 425 million-year-old volcanic ash: American Scientist, v. 96, p. 474481.

E. Callaway , 2011, Fossil data enter the web period: Nature, v. 472, p. 150.

N.D.L. Clark , C. Adams , T. Lawton , A.R. Cruickshank , and K. Woods , 2004, The Elgin marvel: Using magnetic resonance imaging to look at a mouldic fossil from the Permian of Elgin, Scotland, UK: Magnetic Resonance Imaging, v. 22, p. 269273.

P.C.J. Donoghue , S. Bengtson , X. Dong , N.J. Gostling , T. Huldtgren , J.A. Cunningham , C. Yin , Z. Yue , F. Peng , and M. Stampanoni , 2006, Synchrotron X-ray tomographic microscopy of fossil embryos: Nature, v. 442, p. 680683.

D.J. Green , and Z. Alemseged , 2012, Australopithecus afarensis scapular ontogeny, function, and the role of climbing in human evolution: Science, v. 338, p. 514517.

J.W. Hagadorn , S. Xiao , P.C.J. Donoghue , S. Bengtson , N.J. Gostling , M. Pawlowska , E.C. Raff , R.A. Raff , F.R. Turner , Y. Chongyu , C. Zhou , X. Yuan , M.B. McFeely , M. Stampanoni , and K.H. Nealson , 2006, Cellular and subcellular structure of Neoproterozoic animal embryos: Science, v. 314, p. 291294.

Ø. Hammer , 1999, Computer-aided study of growth patterns in tabulate corals, exemplified by Catenipora heintzi from Ringerike, Oslo Region: Norsk Geologisk Tidsskrift, v. 79, p. 219226.

B. Haubitz , M. Prokop , W. Doehring , J.H. Ostrom , and P. Wellnhofer , 1988, Computed tomography of Archaeopteryx : Palaeobiology, v. 14, p. 206213.

J.T. Haug , D.E.G. Briggs , and C. Haug , 2012, Morphology and function in the Cambrian Burgess Shale megacheiran arthropod Leanchoilia superlata and the application of a descriptive matrix: BMC Evolutionary Biology, v. 12, p. 162.

C. Kamenz , J.A. Dunlop , G. Scholtz , H. Kerp , and H. Hass , 2008, Microanatomy of Early Devonian book lungs: Biology Letters, v. 4, p. 212215.

D.M. Kermack , 1970, True serial-sectioning of fossil material: Biological Journal of the Linnean Society, v. 2, p. 4753.

R.A. Ketcham , and W.D. Carlson , 2001, Acquisition, optimization and interpretation of X-ray computed tomographic imagery: Applications to the geosciences: Computers & Geosciences, v. 27, p. 381400.

Z. Kielan-Jaworowska , R. Presley , and C.A. Poplin , 1986, The cranial vascular system in taeniolabidoid multituberculate mammals: Philosophical Transactions of the Royal Society of London, Series B, Biological Sciences, v. 313, p. 525602.

M. Laaß , and B. Schillinger , 2015, Reconstructing the auditory apparatus of therapsids by means of neutron tomography: Physics Procedia, v. 69, p. 628635.

W.E. Lorensen , and H.E. Cline , 1987, Marching Cubes: A high resolution 3D surface construction algorithm: Computer Graphics, v. 21, p. 163169.

L. Ma , K.G. Taylor , P.D. Lee , K.J. Dobson , P.J. Dowey , and L. Courtois , 2016, Novel 3D centimetre-to nano-scale quantification of an organic-rich mudstone: The Carboniferous Bowland Shale, northern England: Marine and Petroleum Geology, v. 72, p. 193205.

J.G. Maisey , 1975, A serial sectioning technique for fossils and hard tissues: Curator, v. 18, p. 140147.

A.C. Maloof , C.V. Rose , R. Beach , B.M. Samuels , C.C. Calmet , D.H. Erwin , G.R. Poirer , N. Yao , and F.J. Simons , 2010, Possible animal-body fossils in pre-Marinoan limestones from South Australia: Nature Geoscience, v. 3, p. 653659.

D. Mietchen , M. Aberhan , B. Manz , O. Hampe , B. Mohr , C. Neumann , and F. Volke , 2008, Three-dimensional magnetic resonance imaging of fossils across taxa: Biogeosciences, v. 5, p. 2541.

H.M. Muir-Wood , 1934, On the internal structure of some Mesozoic Brachiopoda: Philosophical Transactions of the Royal Society of London, Series B, v. 223, p. 511567.

P.J. Orr , Derek J. Siveter , D.E.G. Briggs , David J. Siveter , and M. D. Sutton , 2000, A new arthropod from the Silurian Konservat-Lagerstätte of Herefordshire, UK: Proceedings of the Royal Society B, v. 267, p. 14971504.

M.W. Phaneuf , 1999, Applications of focused ion beam microscopy to materials science specimens: Micron, v. 30, p. 277288.

B.F. Platt , S.T. Hasiotis , and D.R. Hirmas , 2010, Use of low-cost multistripe laser triangulation (MLT) scanning technology for three-dimensional quantitative paleoichnological and neoichnological studies: Journal of Sedimentary Research, v. 80, p. 590610.

C.M. Poplin , and A. de Ricqles , 1970, A technique of serial sectioning for the study of undecalcified fossils: Curator, v. 13, p. 720.

I.A. Rahman , K. Adcock , and R.J. Garwood , 2012, Virtual fossils: A new resource for science communication in paleontology: Evolution: Education and Outreach, v. 5, p. 635641.

I.A. Rahman , S. Zamora , P.L. Falkingham , and J.C. Phillips , 2015, Cambrian cinctan echinoderms shed light on feeding in the ancestral deuterostome: Proceedings of the Royal Society, Series B, v. 282, art. 20151964, DOI: 10.1098/rspb.2015.1964.

E.J. Rayfield , 2007, Finite Element Analysis and understanding the biomechanics and evolution of living and fossil organisms: Annual Review of Earth and Planetary Sciences, v. 35, p. 541576.

H. Reingruber , A. Zankel , P. Mayrhofer , and P. Poelt , 2011, Quantitative characterization of microfiltration membranes by 3D reconstruction: Journal of Membrane Science, v. 372, p. 6674.

F. Remondino , A. Rizzi , S. Girardi , F.M. Petti , and M. Avanzini , 2010, 3D ichnology—Recovering digital 3D models of dinosaur footprints: The Photogrammetric Record, v. 25, p. 266282.

N. Salman , M. Yvinec , and Q. Merigot , 2010, Feature preserving mesh generation from 3D point clouds: Computer Graphics Forum, v. 29, p. 16231632.

J.D. Schiffbauer , and S. Xiao , 2009, Novel application of focused ion beam electron microscopy (FIB-EM) in preparation and analysis of microfossil ultrastructures: A new view of complexity in early eukaryotic organisms: Palaios, v. 24, p. 616626.

J.D. Schiffbauer , and S. Xiao , 2011, Paleobiological applications of focused ion beam electron microscopy (FIB-EM): An ultrastructural approach to the (micro)fossil record, in Laflamme, M., Schiffbauer, J.D., and Dornbos, S.Q., eds., Quantifying the Evolution of Early Life: Numerical Approaches to the Evaluation of Fossils and Ancient Ecosystems: Dordrecht, The Netherlands, Springer, p. 321354.

J.W. Schopf , and A.B. Kudryavtsev , 2009, Confocal laser scanning microscopy and Raman imagery of ancient microscopic fossils: Precambrian Research, v. 173, p. 3949.

A.C. Scott , and A.R. Hemsley , 1991, A comparison of new microscopical techniques for the study of fossil spore wall ultrastructure: Review of Palaeobotany and Palynology, v. 67, p. 133139.

C.S. Shi , J.W. Schopf , and A.B. Kudryavtsev , 2013, Characterization of the stem anatomy of the Eocene fern Dennstaedtiopsis aerenchymata (Dennstaedtiaceae) by use of confocal laser scanning microscopy: American Journal of Botany, v. 100, p. 16261640.

W.J. Sollas , 1903, A method for the investigation of fossils by serial sections: Philosophical Transactions of the Royal Society of London, Series B, v. 196, p. 259265.

S. Stoinski , 2011, From a skeleton to a 3D dinosaur, in Elewa, A.M.T., ed., Computational Paleontology: Berlin, Springer, p. 147164.

B.J. Strasser , 2008, GenBank—Natural history in the 21st century?: Science, v. 322, p. 537538.

M.D. Sutton , 2008, Tomographic techniques for the study of exceptionally preserved fossils: Proceedings of the Royal Society, Series B, v. 275, p. 15871593.

M.D. Sutton , D.E.G. Briggs , David J. Siveter , and Derek J. Siveter , 2001a, An exceptionally preserved vermiform mollusc from the Silurian of England: Nature, v. 410, p. 461463.

P. Tafforeau , R. Boistel , E. Boller , A. Bravin , M. Brunet , Y. Chaimanee , P. Cloetens , M. Feist , J. Hoszowska , J.-J. Jaeger , R.F. Kay , V. Lazzari , L. Marivaux , A. Nel , C. Nemoz , X. Thibault , P. Vignaud , and S. Zabler , 2006, Applications of X-ray synchrotron microtomography for non-destructive 3D studies of paleontological specimens: Applied Physics A, v. 83, p. 195202.

J.R. Tate , and C.E. Cann , 1982, High-resolution computed tomography for the comparative study of fossil and extant bone: American Journal of Physical Anthropology, v. 58, p. 6773.

M.D. Uchic , L. Holzer , B.J. Inkson , E.L. Principe , and P. Munroe , 2007, Three-dimensional microstructural characterization using focused ion beam tomography: MRS Bulletin, v. 32, p. 408416.

C.A. Volkert , and A.M. Minor , 2007, Focused ion beam microscopy and micromachining: MRS Bulletin, v. 32, p. 389399.

W.A. Watters , and J.P. Grotzinger , 2001, Digital reconstruction of calcified early metazoans, terminal Proterozoic Nama Group, Namibia: Paleobiology, v. 27, p. 159171.

B. Winkler , 2006, Applications of neutron radiography and neutron tomography: Reviews in Mineralogy and Geochemistry, v. 63, p. 459471.

G. Zhang , Y. Tsou , and A.L. Rosenberger , 2000, Reconstruction of the Homunculus skull using a combined scanning and stereolithography process: Rapid Prototyping Journal, v. 6, p. 267275.

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The Paleontological Society Papers
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