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Temporal and longitudinal analysis of Danish Swine Salmonellosis Control Programme data: implications for surveillance

Published online by Cambridge University Press:  16 January 2008

J. BENSCHOP*
Affiliation:
EpiCentre, Institute of Veterinary, Animal, and Biomedical Sciences, Massey University, New Zealand
M. A. STEVENSON
Affiliation:
EpiCentre, Institute of Veterinary, Animal, and Biomedical Sciences, Massey University, New Zealand
J. DAHL
Affiliation:
Danish Meat Association, Copenhagen, Denmark
R. S. MORRIS
Affiliation:
EpiCentre, Institute of Veterinary, Animal, and Biomedical Sciences, Massey University, New Zealand
N. P. FRENCH
Affiliation:
EpiCentre, Institute of Veterinary, Animal, and Biomedical Sciences, Massey University, New Zealand
*
*Author for correspondence: Ms. J. Benschop, EpiCentre, Institute of Veterinary, Animal, and Biomedical Sciences, Massey University, Private Bag 11-222, Palmerston North, New Zealand. (Email: j.benschop@massey.ac.nz)
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Summary

The control programme for Salmonella infection in Danish swine has reduced the number of human cases attributable to pork consumption and the focus is now on cost-effectiveness. We applied time-series and longitudinal analyses to data collected between January 1995 and May 2005 to identify if there were predictable periods of risk that could inform sampling strategy; to investigate the potential for forecasting for early aberration detection; and to explore temporal redundancy within the sampling strategy. There was no evidence of seasonality hence no justification to change to targeted sampling at high-risk periods. The forecast of seropositivity made using an ARIMA (0, 1, 2) model had a root-mean-squared percentage error criterion of 8·4% indicating that accurate forecasts are possible. The lorelogram identified temporal redundancy at up to 10 weeks suggesting little value in sampling more frequently than this on the ‘average’ farm. These findings have practical applications for both farm-level sampling strategy and national-level aberration detection which potentially could result in a more cost-effective surveillance strategy.

Information

Type
Original Papers
Copyright
Copyright © 2008 Cambridge University Press
Figure 0

Fig. 1. Map of Denmark showing location of regions. The central island group containing Vestjalland, Roskilde, Storstrom, Kobenhavn and Fredriksborg is Zealand. The largest land mass is Jutland.

Figure 1

Fig. 2. Loess smoothed plot of the percentage of pigs positive for the Danish mix-ELISA stratified by level of positivity.

Figure 2

Fig. 3 (ad). Loess smoothed plots of the percentage of pigs in the high positive strata (adjusted OD% >50) for the Danish mix-ELISA stratified by region.

Figure 3

Fig. 4 (ah). Plot of stationary time series for (a) Denmark, (b) Nordjylland, (c) Viborg, (d) Århus, (e) Ringkobing, (f) Ribe, (g) Sonderjylland, and (h) Fyn respectively. The raw series has been logged to stabilize the variance and then detrended with a second-order polynomial. The dashed horizontal line is at the median percentage positive (0). The circles highlight the peak of positive residuals seen in counties in the north-west regions of Jutland in late 2000.

Figure 4

Fig. 5. Lorelograms (estimated mean log odds ratio as a function of lag time) for stratified data from May 2002 until September 2004. Grey shading is the 95% confidence intervals around the log odds ratios.