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Imported cases and minimum temperature drive dengue transmission in Guangzhou, China: evidence from ARIMAX model

Published online by Cambridge University Press:  21 May 2018

Q. L. Jing
Affiliation:
Department of Medical Statistics and Epidemiology, School of Public Health, Sun Yat-sen University, Guangzhou, People's Republic of China
Q. Cheng
Affiliation:
Ministry of Education Key Laboratory for Earth System Modeling, Center for Earth System Science, Tsinghua University, Beijing, People's Republic of China
J. M. Marshall
Affiliation:
Biostatistics and Epidemiology, School of Public Health, University of California, Berkeley, California, USA
W. B. Hu
Affiliation:
School of Public Health and Social Work, Queensland University of Technology, Brisbane, Australia
Z. C. Yang
Affiliation:
Department of Infectious Diseases, Guangzhou Center for Disease Control and Prevention, Guangzhou, People's Republic of China
J. H. Lu*
Affiliation:
Department of Medical Statistics and Epidemiology, School of Public Health, Sun Yat-sen University, Guangzhou, People's Republic of China
*
Author for correspondence: J. H. Lu, E-mail: lujiahai@mail.sysu.edu.cn
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Abstract

Dengue is the fastest spreading mosquito-transmitted disease in the world. In China, Guangzhou City is believed to be the most important epicenter of dengue outbreaks although the transmission patterns are still poorly understood. We developed an autoregressive integrated moving average model incorporating external regressors to examine the association between the monthly number of locally acquired dengue infections and imported cases, mosquito densities, temperature and precipitation in Guangzhou. In multivariate analysis, imported cases and minimum temperature (both at lag 0) were both associated with the number of locally acquired infections (P < 0.05). This multivariate model performed best, featuring the lowest fitting root mean squared error (RMSE) (0.7520), AIC (393.7854) and test RMSE (0.6445), as well as the best effect in model validation for testing outbreak with a sensitivity of 1.0000, a specificity of 0.7368 and a consistency rate of 0.7917. Our findings suggest that imported cases and minimum temperature are two key determinants of dengue local transmission in Guangzhou. The modelling method can be used to predict dengue transmission in non-endemic countries and to inform dengue prevention and control strategies.

Information

Type
Original Paper
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright
Copyright © Cambridge University Press 2018
Figure 0

Fig. 1. The location of Guangzhou in China. The left plot is the whole view of China, with a dark colour indicating Guangdong Province. The right graph zooms in on Guangdong Province, with a dark colour indicating its capital city Guangzhou.

Figure 1

Fig. 2. Natural logarithm of the monthly indigenous dengue cases +2 from 2001 to 2016 in Guangzhou, China.

Figure 2

Fig. 3. The patterns of the recorded risk factors, including (a) imported cases (n), (b) temperature (°C), (c) precipitation (10* mm) and (d) vector density (percentages for BI and SSI, numbers per hour for ADI) per month.

Figure 3

Fig. 4. Autocorrelation function (ACF) and partial ACF (PACF) plots of the log transformation plus 2 for the original monthly indigenous dengue cases (a and b) and the ACF and PACF plots for the residuals of the ARIMA (0,1,1)(0,0,2)12 model (c and d). The dotted lines indicate the 95% confidence intervals.

Figure 4

Table 1. Cross-correlations between the prewhitened factors and the indigenous cases (log (number of indigenous cases +2)) time series between 2001 and 2014

Figure 5

Table 2. Summary of the fitted parameters of the univariate ARIMAX model analysis in Guangzhou, 2001–2016

Figure 6

Table 3. Summary of the fitted parameters of the multivariate ARIMAX model analysis in Guangzhou, 2001–2016

Figure 7

Fig. 5. Log transformation of the monthly dengue indigenous cases in Guangzhou from 2001 to 2016. (a) ARIMAX (0,1,1)(0,0,2)12 model with the imported cases at lag 0 tested by one-step validation method for the test data, (b) ARIMAX (0,1,1)(0,0,2)12 model with both the imported cases and the minimum temperature at lag 0, predicted by one-step validation method by test data.

Figure 8

Fig. 6. Cross-validation for testing dengue outbreak in Guangzhou. The upper row of points in the graph denotes the predicted outbreaks by our model and the lower row shows the observed outbreaks. The lines show the predicted values and actual values respectively. (a) Testing performance for the ARIMAX (0,1,1)(0,0,2)12 model with the imported cases at lag 0. (b) Testing performance for the ARIMAX (0,1,1)(0,0,2)12 model with both the imported cases and minimum temperature at lag 0.

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