Hostname: page-component-89b8bd64d-ktprf Total loading time: 0 Render date: 2026-05-10T04:19:16.480Z Has data issue: false hasContentIssue false

Structural Brain MRI Trait Polygenic Score Prediction of Cognitive Abilities

Published online by Cambridge University Press:  02 October 2015

Michelle Luciano*
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Department of Psychology, University of Edinburgh, Edinburgh, UK
Riccardo E. Marioni
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Medical Genetics Section, Centre for Genomic and Experimental Medicine, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK Queensland Brain Institute, The University of Queensland, Brisbane, Australia
Maria Valdés Hernández
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK Scottish Imaging Network, A Platform for Scientific Excellence (SINAPSE) Collaboration, Department of Neuroimaging Sciences, University of Edinburgh, Edinburgh, UK
Susana Muñoz Maniega
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK Scottish Imaging Network, A Platform for Scientific Excellence (SINAPSE) Collaboration, Department of Neuroimaging Sciences, University of Edinburgh, Edinburgh, UK
Iona F. Hamilton
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK Scottish Imaging Network, A Platform for Scientific Excellence (SINAPSE) Collaboration, Department of Neuroimaging Sciences, University of Edinburgh, Edinburgh, UK
Natalie A. Royle
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK Scottish Imaging Network, A Platform for Scientific Excellence (SINAPSE) Collaboration, Department of Neuroimaging Sciences, University of Edinburgh, Edinburgh, UK
Ganesh Chauhan
Affiliation:
Inserm Research Center for Epidemiology and Biostatistics (U897)—Team Neuroepidemiology, Bordeaux, France University of Bordeaux, Bordeaux, France
Joshua C. Bis
Affiliation:
Cardiovascular Health Research Unit, University of Washington, Seattle, Washington, USA Department of Medicine, University of Washington, Seattle, Washington, USA
Stephanie Debette
Affiliation:
Inserm Research Center for Epidemiology and Biostatistics (U897)—Team Neuroepidemiology, Bordeaux, France University of Bordeaux, Bordeaux, France Department of Neurology, Boston University School of Medicine, Boston, Massachusetts, USA Department of Neurology, Bordeaux University Hospital, Bordeaux, France
Charles DeCarli
Affiliation:
Department of Neurology and Center for Neuroscience, University of California at Davis, Davis, California, USA
Myriam Fornage
Affiliation:
Brown Foundation Institute of Molecular Medicine, Division of Epidemiology, School of Public Health, University of Texas Health Science Center at Houston, Houston, Texas, USA Human Genetics Center, Division of Epidemiology, School of Public Health, University of Texas Health Science Center at Houston, Houston, Texas, USA
Reinhold Schmidt
Affiliation:
Department of Neurology, Medical University Graz, Graz, Austria
M. Arfan Ikram
Affiliation:
Departments of Epidemiology, Radiology and Neurology at Erasmus MC University Medical Center, Rotterdam, the Netherlands
Lenore J. Launer
Affiliation:
Laboratory of Epidemiology, Demography, and Biometry, National Institute on Aging, Bethesda, Maryland, USA
Sudha Seshadri
Affiliation:
Department of Neurology, Boston University School of Medicine, Boston, Massachusetts, USA Framingham Heart Study, Framingham, Massachusetts
Mark E. Bastin
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK Scottish Imaging Network, A Platform for Scientific Excellence (SINAPSE) Collaboration, Department of Neuroimaging Sciences, University of Edinburgh, Edinburgh, UK
David J. Porteous
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Medical Genetics Section, Centre for Genomic and Experimental Medicine, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK
Joanna Wardlaw
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Brain Research Imaging Centre, University of Edinburgh, Edinburgh, UK Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK Scottish Imaging Network, A Platform for Scientific Excellence (SINAPSE) Collaboration, Department of Neuroimaging Sciences, University of Edinburgh, Edinburgh, UK
Ian J. Deary
Affiliation:
Centre for Cognitive Ageing and Cognitive Epidemiology, University of Edinburgh, Edinburgh, UK Department of Psychology, University of Edinburgh, Edinburgh, UK
Generation Scotland
Affiliation:
Medical Genetics Section, Centre for Genomic and Experimental Medicine, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, UK
the CHARGE Consortium
Affiliation:
Department of Neurology, Boston University School of Medicine, Boston, Massachusetts, USA Framingham Heart Study, Framingham, Massachusetts
*
address for correspondence: Michelle Luciano, Psychology, University of Edinburgh, 7 George Square, EH8 9JZ, UK. E-mail: michelle.luciano@ed.ac.uk

Abstract

Structural brain magnetic resonance imaging (MRI) traits share part of their genetic variance with cognitive traits. Here, we use genetic association results from large meta-analytic studies of genome-wide association (GWA) for brain infarcts (BI), white matter hyperintensities, intracranial, hippocampal, and total brain volumes to estimate polygenic scores for these traits in three Scottish samples: Generation Scotland: Scottish Family Health Study (GS:SFHS), and the Lothian Birth Cohorts of 1936 (LBC1936) and 1921 (LBC1921). These five brain MRI trait polygenic scores were then used to: (1) predict corresponding MRI traits in the LBC1936 (numbers ranged 573 to 630 across traits), and (2) predict cognitive traits in all three cohorts (in 8,115–8,250 persons). In the LBC1936, all MRI phenotypic traits were correlated with at least one cognitive measure, and polygenic prediction of MRI traits was observed for intracranial volume. Meta-analysis of the correlations between MRI polygenic scores and cognitive traits revealed a significant negative correlation (maximal r = 0.08) between the HV polygenic score and measures of global cognitive ability collected in childhood and in old age in the Lothian Birth Cohorts. The lack of association to a related general cognitive measure when including the GS:SFHS points to either type 1 error or the importance of using prediction samples that closely match the demographics of the GWA samples from which prediction is based. Ideally, these analyses should be repeated in larger samples with data on both MRI and cognition, and using MRI GWA results from even larger meta-analysis studies.

Information

Type
Articles
Copyright
Copyright © The Author(s) 2015 
Figure 0

TABLE 1 Meta-Analysis Standardized Betas (SE) Between MRI Trait Polygenic Scores and Cognitive Traits

Supplementary material: File

Luciano supplementary material

Tables S1-S4 and Figure S1

Download Luciano supplementary material(File)
File 73.1 KB