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Epigenetic Influences on Neurodevelopment at 11 Years of Age: Protocol for the Longitudinal Peri/Postnatal Epigenetic Twins Study at 11 Years of Age (PETS@11)

Published online by Cambridge University Press:  03 February 2020

Pamela Leong
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia
Yuk Jing Loke
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia
Richard Saffery
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia
Tim Silk
Affiliation:
School of Psychology, Deakin University, Melbourne, Victoria, Australia Developmental Imaging Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia
Alice Burnett
Affiliation:
Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia Victorian Infant Brain Studies Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Premature Infant Follow-Up Programme, Royal Women’s Hospital, Melbourne, Victoria, Australia Neonatal Medicine, Royal Children’s Hospital, Melbourne, Victoria, Australia
Elisha Josev
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia Neurodisability and Rehabilitation Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia
Katrina Scurrah
Affiliation:
Twins Research Australia, Centre for Epidemiology and Biostatistics, Melbourne School of Population and Global Health, The University of Melbourne, Melbourne, Victoria, Australia
Christiane Theda
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia Obstetrics and Gynaecology, Royal Women’s Hospital, Melbourne, Victoria, Australia
Anna Czajko
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia
Emmanuel PK Pua
Affiliation:
Developmental Imaging Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Melbourne School of Psychological Sciences, University of Melbourne, Melbourne, Victoria, Australia
Marc L Seal
Affiliation:
Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia Developmental Imaging Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia
Jeffrey M Craig*
Affiliation:
Epigenetics Group, Murdoch Children’s Research Institute, Melbourne, Victoria, Australia Department of Paediatrics, The University of Melbourne, Melbourne, Victoria, Australia Centre for Molecular and Medical Research, Deakin University School of Medicine, Geelong, Victoria, Australia
*
Author for correspondence: Jeffrey M Craig, Email: Jeffrey.craig@deakin.edu.au

Abstract

Neurodevelopment is sensitive to genetic and pre/postnatal environmental influences. These effects are likely mediated by epigenetic factors, yet current knowledge is limited. Longitudinal twin studies can delineate the link between genetic and environmental factors, epigenetic state at birth and neurodevelopment later in childhood. Building upon our study of the Peri/postnatal Epigenetic Twin Study (PETS) from gestation to 6 years of age, here we describe the PETS 11-year follow-up in which we will use neuroimaging and cognitive testing to examine the relationship between early-life environment, epigenetics and neurocognitive outcomes in mid-childhood. Using a within-pair twin model, the primary aims are to (1) identify early-life epigenetic correlates of neurocognitive outcomes; (2) determine the developmental stability of epigenetic effects and (3) identify modifiable environmental risk factors. Secondary aims are to identify factors influencing gut microbiota between 6 and 11 years of age to investigate links between gut microbiota and neurodevelopmental outcomes in mid-childhood. Approximately 210 twin pairs will undergo an assessment at 11 years of age. This includes a direct child cognitive assessment, multimodal magnetic resonance imaging, biological sampling, anthropometric measurements and a range of questionnaires on health and development, behavior, dietary habits and sleeping patterns. Data from complementary data sources, including the National Assessment Program — Literacy and Numeracy and the Australian Early Development Census, will also be sought. Following on from our previous focus on relationships between growth, cardiovascular health and oral health, this next phase of PETS will significantly advance our understanding of the environmental interactions that shape the developing brain.

Figure 0

Table 1. Summary of sample and data collection

Figure 1

Fig. 1. Outline of a typical schedule of a study visit day. The start time of the study visit is dependent on the type of consent given, but variability is minimized (within an hour difference) to ensure time of sample and data collection are consistent across all participants. The twins’ order of MRI and cognitive assessment data acquisition will be randomized to ensure balanced proportion of first-born and second-born completing the cognitive protocol prior to MRI and vice versa. Note: *Actual start and finish times will vary depending on room availability, participant preference (including breaks) and type of consent.

Figure 2

Table 2. MRI sequence parameters for scanning