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Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants

Published online by Cambridge University Press:  21 March 2025

Leslie Contador-Álvarez
Affiliation:
Programa de Doctorado en Ciencias mención Modelado de Sistemas Químicos y Biológicos, Universidad de Talca, Talca, Chile
Tamara Rojas-Rocco
Affiliation:
Programa de Doctorado en Ciencias mención Modelado de Sistemas Químicos y Biológicos, Universidad de Talca, Talca, Chile
Talía Rodríguez-Gómez
Affiliation:
Programa de Doctorado en Ciencias mención Modelado de Sistemas Químicos y Biológicos, Universidad de Talca, Talca, Chile
María Eugenia Rubio-Meléndez
Affiliation:
Electrical Signaling in Plants (ESP) Laboratory–Center of Bioinformatics, Simulation and Modeling (CBSM), Faculty of Engineering, Universidad de Talca, Talca, Chile
Janin Riedelsberger
Affiliation:
Electrical Signaling in Plants (ESP) Laboratory–Center of Bioinformatics, Simulation and Modeling (CBSM), Faculty of Engineering, Universidad de Talca, Talca, Chile
Erwan Michard
Affiliation:
Instituto de Ciencias Biológicas, Universidad de Talca, Talca, Chile
Ingo Dreyer*
Affiliation:
Electrical Signaling in Plants (ESP) Laboratory–Center of Bioinformatics, Simulation and Modeling (CBSM), Faculty of Engineering, Universidad de Talca, Talca, Chile
*
Corresponding author: Ingo Dreyer; Email: idreyer@utalca.cl

Abstract

Homeostats are important to control homeostatic conditions. Here, we have analyzed the theoretical basis of their dynamic properties by bringing the K homeostat out of steady state (i) by an electrical stimulus, (ii) by an external imbalance in the K+ or H+ gradient or (iii) by a readjustment of transporter activities. The reactions to such changes can be divided into (i) a short-term response (tens of milliseconds), where the membrane voltage changed along with the concentrations of ions that are not very abundant in the cytosol (H+ and Ca2+), and (ii) a long-term response (minutes and longer) caused by the slow changes in K+ concentrations. The mechanistic insights into its dynamics are not limited to the K homeostat but can be generalized, providing a new perspective on electrical, chemical, hydraulic, pH and Ca2+ signaling in plants. The results presented here also provide a theoretical background for optogenetic experiments in plants.

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Type
Theories
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2025. Published by Cambridge University Press in association with John Innes Centre
Figure 0

Figure 1. Response of the K homeostat to a very rapid voltage pulse (ΔV). The K homeostat in steady state is challenged at t = 0 s by a rapid (1 ms) hyperpolarization (a–d) or depolarization (e–h) and is then left to its own devices again. The induced net currents (b, f) cause the membrane voltage to reset over time (a, e). The net currents are carried by net fluxes of K+ (JK; c, g) and H+ (JH; d, h) across the membrane.

Figure 1

Figure 2. Fundamental response of a homeostat to a voltage stimulus. A voltage stimulus (ΔV) induces a net current, which in turn causes a negative restoring force for the membrane voltage. The system is stable at ΔV = 0.

Figure 2

Figure 3. Buffer-dependent changes of the internal proton concentration in response to a voltage stimulus. Hyperpolarization (a) or depolarization (b) provoke H+ fluxes that may significantly modify the internal pH (pHin). The magnitude of this pH change depends on the buffer capacity of the cell and the composition of the homeostat. Compared are cells with a strong (≥10 mM; black curves) and a very weak (0.1 mM) buffer capacity, as well as a K homeostat with high () and one with low () K-channel activity.

Figure 3

Figure 4. Response of the K homeostat to a rapid change in the K+ gradient (ΔEK). The K homeostat in steady state is challenged at t = 0 s by a doubling of [K+]outEK > 0). The induced net currents (b, e) cause the membrane voltage to reset over time (a, d). The net currents are carried by net fluxes of K+ (JK, green) and H+ (JH, blue; c, f) across the membrane. Please note the different answers in the millisecond (short-term response, a–c) and minutes time scale (long-term response, d–f).

Figure 4

Figure 5. Changes in the membrane voltage as a response to changes in gKC of the K homeostat. Shown is the first phase of the biphasic adjustment of the voltage. (a) In scenario 1, gKC started at t = 0 to decay exponentially with time constant τ toward the gKC value of scenario 2 (decay by factor 10). (b) In scenario 2, gKC started at t = 0 to increase with exponential saturation with time constant τ toward the gKC value of scenario 1 (increase by factor 10).

Figure 5

Figure 6. Schematic overview of the dynamic properties of the K homeostat. Changes in the membrane voltage ($\Delta V$), the potassium gradient ($\Delta {E}_K$), the proton gradient ($\Delta {E}_H$), and the transporter activities ($\Delta {g}_X$) influence each other. The effects manifest rapidly within tens of milliseconds (a) and slowly on a time scale of tens of minutes (b). The interactions shown with dashed arrows in (a) only occur if the buffer capacity is absent or low. In addition to the shown interactions, there might also be feedbacks on an intermediate time scale from $\Delta V$, $\Delta {E}_K$, and/or $\Delta {E}_H$ on $\Delta {g}_X$ that are not indicated; for example, in the case of voltage-gated ion channels, where $\Delta V$ feeds back on $\Delta {g}_X$ (Dreyer et al., 2004).

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Author comment: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R0/PR1

Comments

Dear Editor,

enclosed please find the second part of our analyses of homeostats in plants. In the first part (DOI: 10.1017/qpb.2024.8), we provided a hands-on tutorial for modeling homeostats and anlyzed homeostats in steady state. Now, we went one step further and investigated the reaction of homeostats on disturbances of this steady state. In the first part, we concluded that homeostats are the hidden rulers of ion homeostasis in plants, and now in the second part, we have to conclude that homeostats provide also the basis of electrical, hydraulic, pH, and Ca signaling in plants. We consider these as important insights that we would like to share with the scientific community.

Looking forward for a positive response

Best regards

Ingo Dreyer

Review: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R0/PR2

Conflict of interest statement

Reviewer declares none.

Comments

A logical continuation of the formulation of the model of a K+ homeostat in their previous studies is the testing of its behavior upon perturbations of membrane voltage, sudden changes of external K+ and H+ concentrations, and the turnover rate of individual transporters (here,as an example, ensemble conduction of a population of K+ channels, which could be, for instance, artificially evoked in an optogenetic experiment). Results and conclusions have a fundamental character and represent an important step in a construction of a “superhomeostat”, which combines diverse homeostat circuits.

I have few queries:

-An important conclusion is a “voltage-stabilizing property” of the K+ homeostat. No doubts, it should be true for the circuit which includes H+ pumps, H+/K+ symporters and antiporters, and K+-selective channels. But, what about nonselective cation channels, which hardly differentiate between K+ and Na+? Or, worse, with a low cation-anion preference? Experimentally, there are proofs for long (tens of minutes-days) lasting membrane depolarizations upon strong salt or oxidative stress. Apparently, K+ homeostat fails in this case. Should it be meaningful to specify these limitations, when a disturbance is beyond a capacity of a K+ homeostat?

- Lines 232-233, this very low level for pH buffer capacity seems unrealistic.

-Line 433. I would disagree. Intracellular buffer for Ca2+ (a plethora of Ca2+ binding molecules including proteins/ Ca2+ sensors), of course, exists, although in plants, up to my knowledge, there were no systematic studies to evaluate its capacity. In my opinion, its approximation may be a submillimolar value for the cytoplasm.

- Please, check, is it correct to use the term “equilibrium” in lines 313, 314, 420, when it is apparently speaking about steady state condition.

Review: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R0/PR3

Conflict of interest statement

Reviewer declares none.

Comments

This theoretical study by Contador -Álvarez et al. is a follow-up work to a previous publication in the same journal dealing with the K+ homeostat (and elaborating on previous papers on this issue by the corresponding author, Ingo Dreyer). In that previous work the homeostat was introduced as a tool to analyse K+ and H+ concentrations and fluxes under steady state conditions. K+ and H+ homeostasis were shown to result from the interplay of a H+ ATPase, a K+ conductance and H+/K+ symport and antiport, also including H+ buffering. Here, the response to a perturbation of the system is analysed with the same computational tool, analysing the response to sudden changes in (i) membrane voltage, (ii) K+ concentration, and (iii) K+ membrane conductance. This is indeed a logical step forward. The simplicity of this approach proved to be a great advantage for extending our basic knowledge and understanding of membrane transport in plants, but it also comes with a severe limitation: The scenarios are rather artificial, since they refer to a cell with only K+ and H+ as permeable cations, and membrane-impermeable anions required for charge balance, a situation we won’t find in nature. The authors are aware of this limitation, since they state at the end of the discussion that “The long-term simulations presented in this study should therefore not been overinterpreted as we have considered a homeostat in isolation. In real life, cellular countermeasures involving other homeostats and regulatory feedbacks”. However, it is conceivable to design model systems with exactly these properties, e.g. oocytes co-expressing this set of transporters (and maybe inhibiting native anion channels); maybe this should still be pointed out explicitly.

I am sure the authors will explain to us in the near future how K+, H+ and Ca2+ signatures come about, and how they can be decoded by the cell.

I have a number of critical points to raise:

l. 62 …as an example

l. 172 some K+ is transported, so better say: effects on [K+] are negligible..

l. 170 onwards: The homeostat is used in this scenario to analyse the response of the membrane to a stepwise change in voltage at a timescale up to 100 ms. However, this leads us to a fundamental problem: It was not designed for that purpose, but rather, to describe a steady state. Hence, although it does include the kinetics of the buffer reactions adjusting pH, but it doesn’t include the kinetics of the K+ channel and the transporters which will respond with a delay to a stepwise change in voltage (and. likewise, K+). For an ion channel this delay will be in the range of maybe 10 to 100 ms, as numerous patch clamp experiments and analysis in oocytes after heterologous expression have shown, and for a H+ K+ cotransporter such as HAK5 I expect similar kinetics (though I didn’t find any data in the literature). As for a response to a change in K+ concentration, a recent publication by Maierhofer et al. (2024; Nature Communications 15.1; 8558) revealed that it takes even seconds until a new steady state is reached (refers to the next experiment). So the curves shown here are of little practical significance and rather show the properties of the algorithm used here; in the model applied to this scenario all transporters respond instantaneously to a change in parameters. The authors are in principal aware of that problem later saying that “Changes in the parameters gx are usually not instantaneous and follow chemical reaction kinetics” (l. 145), but they treat this issue separately instead of including it when considering changes in voltage and K+ concentration.

Insets to figures: In addition to membrane transport, circular fluxes are shown. The arrows are superimposed but don’t match, which makes the figure look messy and over-complicated.

l. 401: “…are not necessarily realistic…”

l. 411: …manifest themselves in group behaviours, leading to exponential activation and deactivation time courses…

l. 413 ff: This paragraph is a little awkward and needs rephrasing: e.g. we can subdivide the gp timecourse to infinitesimal stepwise changes with delta V following delta gp…

The scenario described here does not only apply to pressure sensing, but to any other (chemical) stimulus, such as hormone, second messengers…

l. 435 There is Ca2+ buffering as well! Bound Ca2+ is exceeding free Ca2+ by orders of magnitude.

l. 450 …long-term interplay between…

l. 455 It seems that H+ can serve as a balance between K+ and anion homeostat?!

Supplement:

Fig S5E: I really have a problem to understand the pH profiles. I would expect an s-shaped curve, with slow pH change at the beginning when the buffer capacity is at maximum and an increase in slope until the buffer is ‘broken’ and a rapid transition to a new steady state when the H+ flux ends.

Text S1, figure S7: mx and sx correspond to chord conductance and slope conductance. The latter has little significance, whereas the former is, from a thermodynamic standpoint, the relevant parameter. Hence, approximating the curve with a Taylor series is not of much practical use either.

Recommendation: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R0/PR4

Comments

Dear Ingo et al,

Thank you for submitting your manuscript on your exciting work on homeostat dynamics to QPB. The reviewers and I are positive about this submission but feel the work could be strengthened by clarifying a number of points (see full reviews for some excellent comments and questions).

I look forward to receiving your revised manuscript.

With best wishes

Richard

Decision: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R0/PR5

Comments

No accompanying comment.

Author comment: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R1/PR6

Comments

Dear Richard and Olivier,

thank you very much for the assessment of our manuscript. All comments were very helpful to identify those parts of the MS that needed clarification and further explanation. Based on the comments we could elaborate a revised version of the MS. Please find attached:

*) the point-by-point answer to the comments of the reviewers/editors

*) the MS with tracked changes

Best regards

Ingo

P.S.: Confidential comment: There are two new references to manuscripts/papers that are still under review/revision in QPB. These MS were submitted within the frame of the Special Research Topic that Dale and I organize:

*) Brownlee & Wheeler: an excellent MS about Ca2+ in plants, for which I serve as editor. This citation fits perfectly to the issue of Ca-buffering that was addressed by both reviewers. For the MS “Brwonlee&Wheeler” only a very minor revision is needed. As soon as the authors submit their revision, it is expected to be accepted (without further review).

*) Wegner et al: the contribution about potassium in the RT.

Reason: Both references would fit and they would create links between some contribrutions of the RT.

Nevertheless, to be on the safe side, it might be necessary to wait until both are accepted for publication. If QPB wants to proceed faster, one or both references could be easily taken out to avoid this obstacle.

Review: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R1/PR7

Conflict of interest statement

Reviewer declares none.

Comments

The authors have addressed my specific queries.

Review: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R1/PR8

Conflict of interest statement

Reviewer declares none.

Comments

The authors have addressed my previous concerns properly and convincingly. I wish to congratulate them on this work!

My only objection refers to the use of the homeostat for modelling short-term changes in voltage and ion concentrations. For modelling K+/H+/Ca2+ signatures, which is the ultimate goal of this work, the authors will have to amend their homeostat such that the complex, short-term interplay of the parameters (voltage, ion concentrations…) is reflected in a still more realistic way.

Recommendation: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R1/PR9

Comments

Hi Ingo,

Please accept my congratulations on this excellent contribution. We are delighted you chose QPB for this work.

There is a very helpful comment from one of the reviewers regarding the use of your model for short time-scales that you may wish to consider and address before uploading the final version of your manuscript.

With best wishes

Richard

Decision: Dynamics of homeostats: the basis of electrical, chemical, hydraulic, pH and calcium signaling in plants — R1/PR10

Comments

No accompanying comment.