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Benchmarking implementations of functional languages with ‘Pseudoknot’, a float-intensive benchmark

Published online by Cambridge University Press:  07 November 2008

Pieter H. Hartel
Affiliation:
Department of Computer Systems, University of Amsterdam, Kruislaan 403, 1098 SJ Amsterdam, The Netherlands (e-mail: pieter@fwi.uva.nl)
Marc Feeley
Affiliation:
Département d'informatique et r.o., Université de Montréal, succursale centre-ville, Montréal H3C 3J7, Canada (e-mail: feeley@iro.umontreal.ca)
Martin Alt
Affiliation:
Informatik, Universität des Saarlandes, 66041 Saarbrücken 11, Germany (e-mail: alt@cs.uni-sb.de)
Lennart Augustsson
Affiliation:
Department of Computer Systems, Chalmers University of Technology, 412 96 Göteborg, Sweden (e-mail: augustss@cs.chalmers.se)
Peter Baumann
Affiliation:
Department of Computer Science, University of Zurich, Winterthurerstr. 190, 8057 Zurich, Switzerland (e-mail: baumann@ifi.unizh.ch)
Marcel Beemster
Affiliation:
Department of Computer Systems, University of Amsterdam, Kruislaan 403, 1098 SJ Amsterdam, The Netherlands (e-mail: beemster@fwi.uva.nl)
Emmanuel Chailloux
Affiliation:
LIENS, URA 1327 du CNRS, École Normale Supérieure, 45 rue d'Ulm, 75230 PARIS Cédex 05, France (e-mail: Emmanuel.Chailloux@ens.fr)
Christine H. Flood
Affiliation:
Laboratory for Computer Science, MIT, 545 Technology Square, Cambridge, MA 02139, USA (e-mail: chf@lcs.mit.edu)
Wolfgang Grieskamp
Affiliation:
Berlin University of Technology, Franklinstr. 28-29, 10587 Berlin, Germany, (e-mail: wg@cs.tu-berlin.de)
John H. G. Van Groningen
Affiliation:
Faculty of Mathematics and Computer Science, Univ. of Nijmegen, Toernooiveld 1, 6525 ED Nijmegen, The Netherlands (e-mail: johnvg@cs.kun.nl)
Kevin Hammond
Affiliation:
Department of Computing Science, Glasgow University, 17 Lilybank Gardens, Glasgow, GI2 8QQ, UK (e-mail: kh@dcs.glasgow.ac.uk)
Bogumil Hausman
Affiliation:
Computer Science Lab, Ellemtel Telecom Systems Labs, Box 1505, S-125 25 Älvsjö, Sweden (e-mail: bogdan@erix.ericsson.se)
Melody Y. Ivory
Affiliation:
Computer Research Group, Institute for Scientific Computer Research, Lawrence Livermore National Laboratory, P.O. Box 808 L-419, Livermore, CA 94550, USA (e-mail: ivoryl@llnl.gov)
Richard E. Jones
Affiliation:
Department of Computer Science, University of Kent at Canterbury, Canterbury, Kent, CT2 7NF, UK (e-mail: R.E.Jones@ukc.ac.uk)
Jasper Kamperman
Affiliation:
CWI, Kruislaan 413, 1098 SJ Amsterdam, The Netherlands (e-mail: jasper@cwi.nl)
Peter Lee
Affiliation:
Department of Computer Science, Carnegie Mellon University, 5000 Forbes Avenue Pittsburgh, Pennsylvania 15213, USA (e-mail: petel@cs.cmu.edu)
Xavier Leroy
Affiliation:
INRIA Rocquencourt, projet Cristal, B.P. 105, 78153 Le Chesnay, France (e-mail: Xavier.Leroy@inria.fr)
Rafael D. Lins
Affiliation:
Departamento de lnformática, Universidade Federal de Pernambuco, Recife, PE, Brazil (e-mail: rdl@di.ufpe.br)
Sandra Loosemore
Affiliation:
Department of Computer Science, Yale University, New Haven, CT, USA (e-mail: loosemore-sandra@cs.yale.edu)
Niklas Röjemo
Affiliation:
Department of Computer Systems, Chalmers University of Technology, 412 96 Göteborg, Sweden (e-mail: rojemo@cs.chalmers.se)
Manuel Serrano
Affiliation:
INRIA Rocquencourt, projet Icsla, B.P. 105, 78153 Le Chesnay, France (e-mail: Manuel.Serrano@inria.fr)
Jean-Pierre Talpin
Affiliation:
European Computer-Industry Research Centre, Arabella Straβe 17, D-81925 Munich, Germany (e-mail: jp@ecrc.de)
Jon Thackray
Affiliation:
Harlequin Ltd, Barrington Hall, Barrington, Cambridge CB2 5RG, UK (e-mail: jont@harlequin.co.uk)
Stephen Thomas
Affiliation:
Department of Computer Science, University of Nottingham, Nottingham, NG7 2RD, UK (e-mail: spt@cs.nott.ac.uk)
Pum Walters
Affiliation:
CWI, Kruislaan 413, 1098 SJ Amsterdam, The Netherlands (e-mail: pum@cwi.nl)
Pierre Weis
Affiliation:
INRIA Rocquencourt, projet Cristal, B.P. 105, 78153 Le Chesnay, France (e-mail: Pierre.Weis@inria.fr)
Peter Wentworth
Affiliation:
Department of Computer Science, Rhodes University, Grahamstown 6140, South Africa (e-mail: cspw@cs.ru.ac.za)
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Abstract

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Over 25 implementations of different functional languages are benchmarked using the same program, a floating-point intensive application taken from molecular biology. The principal aspects studied are compile time and execution time for the various implementations that were benchmarked. An important consideration is how the program can be modified and tuned to obtain maximal performance on each language implementation. With few exceptions, the compilers take a significant amount of time to compile this program, though most compilers were faster than the then current GNU C compiler (GCC version 2.5.8). Compilers that generate C or Lisp are often slower than those that generate native code directly: the cost of compiling the intermediate form is normally a large fraction of the total compilation time. There is no clear distinction between the runtime performance of eager and lazy implementations when appropriate annotations are used: lazy implementations have clearly come of age when it comes to implementing largely strict applications, such as the Pseudoknot program. The speed of C can be approached by some implementations, but to achieve this performance, special measures such as strictness annotations are required by non-strict implementations. The benchmark results have to be interpreted with care. Firstly, a benchmark based on a single program cannot cover a wide spectrum of ‘typical’ applications. Secondly, the compilers vary in the kind and level of optimisations offered, so the effort required to obtain an optimal version of the program is similarly varied.

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Copyright © Cambridge University Press 1996
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