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Comparison of Familial, Polygenic and Biochemical Predictors of Mortality

Published online by Cambridge University Press:  29 January 2021

John B. Whitfield*
Affiliation:
Department of Genetics and Computational Biology, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia
Lucía Colodro-Conde
Affiliation:
Department of Genetics and Computational Biology, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia
Paul R. H. J. Timmers
Affiliation:
Usher Institute, University of Edinburgh, Teviot Place, Edinburgh, UK
Peter K. Joshi
Affiliation:
Usher Institute, University of Edinburgh, Teviot Place, Edinburgh, UK
Grant W. Montgomery
Affiliation:
Institute of Molecular Bioscience, University of Queensland, Brisbane, Queensland, Australia
Nicholas G. Martin
Affiliation:
Department of Genetics and Computational Biology, QIMR Berghofer Medical Research Institute, Brisbane, Queensland, Australia
*
Author for correspondence: John Whitfield, Email: John.Whitfield@qimrberghofer.edu.au.

Abstract

Mortality risk is known to be associated with many physiological or biochemical risk factors, and polygenic risk scores (PRSs) may offer an additional or alternative approach to risk stratification. We have compared the predictive value of common biochemical tests, PRSs and information on parental survival in a cohort of twins and their families. Common biochemical test results were available for up to 13,365 apparently healthy men and women, aged 17−93 years (mean 49.0, standard deviation [SD] 13.7) at blood collection. PRSs for longevity were available for 14,169 study participants and reported parental survival for 25,784 participants. A search for information on date and cause of death was conducted through the Australian National Death Index, with median follow-up of 11.3 years. Cox regression was used to evaluate associations with mortality from all causes, cancers, cardiovascular diseases and other causes. Linear relationships with all-cause mortality were strongest for C-reactive protein, gamma-glutamyl transferase, glucose and alkaline phosphatase, with hazard ratios (HRs) of 1.16 (95% CI [1.07, 1.24]), 1.15 (95% CI 1.04–1.21), 1.13 (95% CI [1.08, 1.19]) and 1.11 (95% CI [1.05, 1.88]) per SD difference, respectively. Significant nonlinear effects were found for urea, uric acid and butyrylcholinesterase. Lipid risk factors were not statistically significant for mortality in our cohort. Family history and PRS showed weaker but significant associations with survival, with HR in the range 1.05 to 1.09 per SD difference. In conclusion, biochemical tests currently predict long-term mortality more strongly than genetic scores based on genotyping or on reported parental survival.

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Articles
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright
© The Author(s) 2021. Published by Cambridge University Press
Figure 0

Table 1. Statistical summary of biochemical test results for 5527 men and 7791 women with survival data and results for some or all of the listed tests

Figure 1

Table 2. Cox regression for all-cause mortality using either linear (sex- and age-adjusted z-score only) or quadratic (z-score and z-score-squared) terms for test results, with familial clustering to adjust standard errors for relatedness of participants

Figure 2

Fig. 1. Hazard ratios and robust 95% confidence intervals for all-cause mortality in study participants, by sex-specific age-adjusted quintiles of C-reactive protein (CRP), gamma-glutamyl transferase (GGT), glucose, alkaline phosphatase (ALP), urate, urea and creatinine.

Figure 3

Table 3. Prediction of all-cause mortality from polygenic risk scores (PRSs)

Figure 4

Table 4. Prediction of participant of all-cause mortality from parental survival data based on z-transformed Martingale residuals, winzorized at −5, from mothers’ and fathers’ reported survival, and average of mother’s and father’s (mid-parent). There were 3740 deaths among 25,784 participants with information on both mother’s and father’s survival

Figure 5

Fig. 2. Comparison of estimated effects (β-coefficients and standard errors from Cox regression) on all-cause mortality for selected biochemical tests, polygenic risk scores and parental survival data. Risk estimates for the biochemical tests were recalculated for this figure using both linear and quadratic coefficients for predicted risk as listed in Table 2. PRS1 to PRS8; polygenic risk scores; father, mother and mean; parental Martingale residuals (based on their reported survival) for mothers, fathers and mean (mid-parent) value

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