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Phenotypic profiling of lentil (Lens culinaris Medikus) accessions enabled identification of promising lines for use in breeding for high yield, early flowering and desirable traits

Published online by Cambridge University Press:  14 February 2024

Yogesh Dashrath Naik
Affiliation:
Department of Agricultural Biotechnology and Molecular Biology, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India
Vinay Kumar Sharma
Affiliation:
Department of Agricultural Biotechnology and Molecular Biology, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
Muraleedhar Sidaram Aski
Affiliation:
Division of Genetics, Indian Council of Agricultural Research (ICAR)-Indian Agricultural Research Institute, Pusa, New Delhi, India
Sagar Krushnaji Rangari
Affiliation:
Department of Agricultural Biotechnology and Molecular Biology, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India
Raj Kumar
Affiliation:
Department of Agricultural Biotechnology and Molecular Biology, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India
Harsh Kumar Dikshit
Affiliation:
Division of Genetics, Indian Council of Agricultural Research (ICAR)-Indian Agricultural Research Institute, Pusa, New Delhi, India
Sahani Sangita
Affiliation:
Department of Plant Pathology, Tirhut College of Agriculture (TCA), Dholi, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
Ravi Kant
Affiliation:
Department of Genetics and Plant Breeding, Tirhut College of Agriculture (TCA), Dholi, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India
Gyan Mishra
Affiliation:
Division of Seed Science and Technology, ICAR-IARI, Pusa, New Delhi, India
Reyazul Rouf Mir
Affiliation:
Faculty of Agriculture, Sher-e-Kashmir University of Agricultural Sciences and Technology (SKUAST), Sopore, India
Himabindu Kudapa
Affiliation:
Center of Excellence in Genomics & Systems Biology, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT), Patancheru, Hyderabad, India
Dinakaran Elango
Affiliation:
Department of Agronomy, Iowa State University, Ames, IA, USA
Rebecca S. Zwart
Affiliation:
Crop Health Center, University of Southern Queensland (USQ), Toowoomba, Australia
Rajeev Kumar Varshney
Affiliation:
WA State Agricultural Biotechnology Centre, Centre for Crop and Food Innovation, Murdoch University, Murdoch, WA 6150, Australia
Mahendar Thudi*
Affiliation:
Department of Agricultural Biotechnology and Molecular Biology, Dr Rajendra Prasad Central Agricultural University, Pusa, Bihar, India Crop Health Center, University of Southern Queensland (USQ), Toowoomba, Australia College of Agriculture, Family Sciences and Technology, 1005 State University Dr Fort Valley State University, Fort Valley, GA, USA
*
Corresponding author: Mahendar Thudi; Email: Mahendar.Thudi@usq.edu.au
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Abstract

In the face of climate change, developing resilient crops is crucial for global food security in the 21st century to feed a growing population. Lentil (Lens culinaris Medikus) plays a vital role in ensuring global food and nutritional security. Traits like early flowering enable the crop to mature faster, thereby shortening the growing window and reducing yield losses caused by moisture and heat stresses during the reproductive phase. However, issues like limited genetic diversity in this trait remain unaddressed. To address this gap, our study aims to comprehensively assess genetic variability and trait associations in 158 lentil accessions. In the present study, we observed significant variations for days to 50% flowering (67–90 days), days to maturity (109–122 days) and 100 seed weight (1.69–2.68 g) throughout a period of two consecutive years (2020–2021 and 2021–2022). The observed variability in these traits offers a valuable avenue for the improvement of lentil yield through targeted selection and hybridization. Additionally, correlation analysis showed negative correlation between days to 50% flowering and grain yield per plant, while plant height had a significant (P < 0.01) positive correlation with all traits except yield per plant. Furthermore, we identified specific germplasm with exceptional traits that hold significant potential for future breeding programmes. The genotypes EC 223197-A and EC 267696 were identified for early flowering with high yield, and other genotypes that were identified for various traits would serve as breeding material for the introgression of these traits into elite cultivars.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
Copyright © The Author(s), 2024. Published by Cambridge University Press on behalf of National Institute of Agricultural Botany
Figure 0

Table 1. Analysis of variance (ANOVA) for phenological and morphological characters of lentil accessions evaluated in augmented block design

Figure 1

Figure 1. Box-plot showing phenotypic distribution of all seven agronomic traits in the 158 accessions of lentil using calculated BLUPs value. Note: Plant height (PH, cm), number of primary branches (PB), days to 50% flowering (DF), days to maturity (DM), number of pods per plant (PPP), hundred seed weight (HSW, g), grain yield per plant (YPP, g).

Figure 2

Figure 2. Hierarchical clustering of 158 lentil accessions conducted using the unweighted pair group method with arithmetic mean (UPGMA) based on BLUP values of phenotypic traits. The resulting dendrogram illustrates distinct clusters, each represented by a unique colour.

Figure 3

Figure 3. Principal component analysis (PCA) plot of individuals and variables. Principal components (PCs) 1 (representing 37.4% of explained variance) and PC2 (28.1% of explained variance) are plotted. (a) PCA biplot of individual samples in relation to PC1 and PC2. A high cos2 indicates a quality of good representation of the individual on the PC. (b) Correlation circle of a PCA. In a PCA correlation circle plot, vector direction and length play crucial roles in conveying information about the relationships between variables and principal components. The direction of a vector signifies the strength and nature of the correlation between an original variable and a specific principal component; proximity to the component indicates a stronger correlation. Meanwhile, vector length is equally significant, as longer vectors indicate higher correlations. This means that variables with longer vectors contribute more significantly to the variability explained by that principal component. Interpreting the angle between vectors provides insights into the relationships between variables: smaller angles denote positive correlations, while larger angles imply weaker or non-existent correlations.

Figure 4

Table 2. Principal component analysis based Eigen vectors and Eigenvalues explaining the variance contribution from the principal component (PC) axes

Figure 5

Table 3. Promising trait-specific germplasm identified on the basis of combined phenotypic data along with the checks evaluated in the study

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